Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28102 | 3' | -47.9 | NC_005887.1 | + | 13167 | 0.7 | 0.844742 |
Target: 5'- cGCGCGCGCGcagacagCGgGAgcGGUCGa -3' miRNA: 3'- uCGCGCGCGCuuaa---GCgUUauUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 13445 | 0.74 | 0.636151 |
Target: 5'- gGGCGCGCGCauccAAUUCGUAGcc-GUCGa -3' miRNA: 3'- -UCGCGCGCGc---UUAAGCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 13631 | 0.69 | 0.871437 |
Target: 5'- uAGCGCGCGCGug-UCGU------UCGa -3' miRNA: 3'- -UCGCGCGCGCuuaAGCGuuauuuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 13667 | 0.7 | 0.805596 |
Target: 5'- cGCGgGCGUGA--UCGCGGguuGUCGu -3' miRNA: 3'- uCGCgCGCGCUuaAGCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 13823 | 0.67 | 0.946172 |
Target: 5'- cGGCGCGCGUGAGcgUGCc-UGAccgcAUCGu -3' miRNA: 3'- -UCGCGCGCGCUUaaGCGuuAUU----UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 14719 | 0.71 | 0.773992 |
Target: 5'- gGGCGCG-GCGAucgCGCAGgcgacGAUCGa -3' miRNA: 3'- -UCGCGCgCGCUuaaGCGUUau---UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 15281 | 0.7 | 0.815729 |
Target: 5'- aAGCGCgGCacCGAGUUCGUGAagAAGUCGg -3' miRNA: 3'- -UCGCG-CGc-GCUUAAGCGUUa-UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 15316 | 0.68 | 0.902991 |
Target: 5'- cAGCGUGCGCGG--UCGCGcgc--UCGc -3' miRNA: 3'- -UCGCGCGCGCUuaAGCGUuauuuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 15560 | 0.81 | 0.279655 |
Target: 5'- cGGCGCGCGCGAccgcgcucgAUUCGCu---GAUCGc -3' miRNA: 3'- -UCGCGCGCGCU---------UAAGCGuuauUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 15770 | 0.67 | 0.935426 |
Target: 5'- aGGcCGCGgcCGCGAAggCGCAGaagcAGAUCGa -3' miRNA: 3'- -UC-GCGC--GCGCUUaaGCGUUa---UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 16157 | 0.79 | 0.345754 |
Target: 5'- cGGCGCGC-CGAGUgCGCGAgcGAUCGa -3' miRNA: 3'- -UCGCGCGcGCUUAaGCGUUauUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 16769 | 0.67 | 0.935426 |
Target: 5'- gGGCGCGauCGA---CGCGAUGAagGUCGg -3' miRNA: 3'- -UCGCGCgcGCUuaaGCGUUAUU--UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 20784 | 0.69 | 0.853912 |
Target: 5'- cGUG-GCGCaAAUUCGCAGUuugGAAUCGc -3' miRNA: 3'- uCGCgCGCGcUUAAGCGUUA---UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 23679 | 0.8 | 0.31972 |
Target: 5'- cGGCGCGCGCGAA--CGCAucgAAAUUGu -3' miRNA: 3'- -UCGCGCGCGCUUaaGCGUua-UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 24895 | 0.67 | 0.940957 |
Target: 5'- cGCGCGCuCGGucuucUUCGCAGcagccGGAUCGg -3' miRNA: 3'- uCGCGCGcGCUu----AAGCGUUa----UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 26435 | 0.66 | 0.963959 |
Target: 5'- cGGCcCGCGCGGAa-CGCAG---GUCGg -3' miRNA: 3'- -UCGcGCGCGCUUaaGCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 26805 | 0.67 | 0.951075 |
Target: 5'- cGCGCGCGCcGAGUcgUCGCccGUGA--CGa -3' miRNA: 3'- uCGCGCGCG-CUUA--AGCGu-UAUUuaGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 26964 | 0.68 | 0.910113 |
Target: 5'- -cCGCGCGCGAucagCGCGGc--GUCGa -3' miRNA: 3'- ucGCGCGCGCUuaa-GCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 27429 | 0.7 | 0.815729 |
Target: 5'- cGGCGUGCGuCGA--UCGCGAguGAUUGc -3' miRNA: 3'- -UCGCGCGC-GCUuaAGCGUUauUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 27929 | 0.69 | 0.869735 |
Target: 5'- uGCGCGCGuCGggUcCGCuugaacguGUCGg -3' miRNA: 3'- uCGCGCGC-GCuuAaGCGuuauu---UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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