Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28102 | 5' | -58.5 | NC_005887.1 | + | 210 | 1.11 | 0.000239 |
Target: 5'- cCCCGCUGCUCUGCGAAUGCGCGCCAGg -3' miRNA: 3'- -GGGCGACGAGACGCUUACGCGCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 9543 | 0.76 | 0.101578 |
Target: 5'- gCCCGCUGUUCgugcccGUGAAgcggcGCGCGCCGa -3' miRNA: 3'- -GGGCGACGAGa-----CGCUUa----CGCGCGGUc -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 5372 | 0.75 | 0.123735 |
Target: 5'- uUCCGaCUGCUCgaagGCGAAgccaGCGCGaCCGGu -3' miRNA: 3'- -GGGC-GACGAGa---CGCUUa---CGCGC-GGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 1580 | 0.74 | 0.130847 |
Target: 5'- aCCGCcgGCUCggcgGCGcGcgGCGCGCCAa -3' miRNA: 3'- gGGCGa-CGAGa---CGC-UuaCGCGCGGUc -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 36836 | 0.72 | 0.179034 |
Target: 5'- gCCUGCUGCggccggugCUGCGGccggugcugcggccgGUGCuGCGCCAu -3' miRNA: 3'- -GGGCGACGa-------GACGCU---------------UACG-CGCGGUc -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 4674 | 0.72 | 0.181964 |
Target: 5'- aCCGCUGCgcagacgGCGAGggucugauggGCGCGCCGa -3' miRNA: 3'- gGGCGACGaga----CGCUUa---------CGCGCGGUc -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 29637 | 0.72 | 0.186942 |
Target: 5'- uUCUGCUGCUgcGCGAccagcGUGCGCGCguGa -3' miRNA: 3'- -GGGCGACGAgaCGCU-----UACGCGCGguC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 23428 | 0.71 | 0.208621 |
Target: 5'- gCCGCUGCgagauucggugagcgCUGCGGGcUGCcgGUGCCGGg -3' miRNA: 3'- gGGCGACGa--------------GACGCUU-ACG--CGCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 29179 | 0.71 | 0.213661 |
Target: 5'- uCuuGCUGCgCUGCGAGgaucUGCGCgGCCu- -3' miRNA: 3'- -GggCGACGaGACGCUU----ACGCG-CGGuc -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 29186 | 0.71 | 0.219384 |
Target: 5'- uCCCGCUG-UCUGCGc--GCGCGCg-- -3' miRNA: 3'- -GGGCGACgAGACGCuuaCGCGCGguc -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 24879 | 0.71 | 0.219384 |
Target: 5'- --aGCUGCaUCUGCGucuucauguUGCGCGUCGGa -3' miRNA: 3'- gggCGACG-AGACGCuu-------ACGCGCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 29804 | 0.7 | 0.243594 |
Target: 5'- gCCaguaGCUGgaagUCUGCGggUGUgcgcgGCGCCAGa -3' miRNA: 3'- -GGg---CGACg---AGACGCuuACG-----CGCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 4387 | 0.7 | 0.243594 |
Target: 5'- gCCCGUUGaacaagGC-AAUGCGCGCCGGc -3' miRNA: 3'- -GGGCGACgaga--CGcUUACGCGCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 37072 | 0.7 | 0.256512 |
Target: 5'- gCgCGCUGCUCggGCGAcUGCGUuUCAGg -3' miRNA: 3'- -GgGCGACGAGa-CGCUuACGCGcGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 429 | 0.7 | 0.263853 |
Target: 5'- gCCCGCUGUUgCUGCGcucgaacccucugGCGCGUguGg -3' miRNA: 3'- -GGGCGACGA-GACGCuua----------CGCGCGguC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 33360 | 0.7 | 0.269985 |
Target: 5'- uCCCGaCUGCa--GCGGAUGUgcacGCGCCGGc -3' miRNA: 3'- -GGGC-GACGagaCGCUUACG----CGCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 14684 | 0.7 | 0.276933 |
Target: 5'- cCCCGCacgaucggGCUCgucGCGGcggGCGgGCCGGg -3' miRNA: 3'- -GGGCGa-------CGAGa--CGCUua-CGCgCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 26963 | 0.69 | 0.291255 |
Target: 5'- uCCUGCaggccGUUCgGCGAcgGUGUGCCGGu -3' miRNA: 3'- -GGGCGa----CGAGaCGCUuaCGCGCGGUC- -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 38556 | 0.69 | 0.298631 |
Target: 5'- gCCGCUGUUCUGCacGAUGCG-GUCGc -3' miRNA: 3'- gGGCGACGAGACGc-UUACGCgCGGUc -5' |
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28102 | 5' | -58.5 | NC_005887.1 | + | 21813 | 0.69 | 0.298631 |
Target: 5'- gUCCGCgGCgCUGCcgg-GCGCGCCGa -3' miRNA: 3'- -GGGCGaCGaGACGcuuaCGCGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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