miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 5' -58.5 NC_005887.1 + 12322 0.67 0.415952
Target:  5'- gCUGCaGCUCaGCGAAcUGCGUacgucgcucgccgGCCAGg -3'
miRNA:   3'- gGGCGaCGAGaCGCUU-ACGCG-------------CGGUC- -5'
28102 5' -58.5 NC_005887.1 + 28478 0.68 0.337672
Target:  5'- gCCGCUucaGCUC-GaCGAAguagacGCGCGCCGGc -3'
miRNA:   3'- gGGCGA---CGAGaC-GCUUa-----CGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 2408 0.68 0.345912
Target:  5'- gCCGCUgGCUUcgagGCGAAgccCGCGCCGa -3'
miRNA:   3'- gGGCGA-CGAGa---CGCUUac-GCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 24931 0.68 0.354296
Target:  5'- aCCGUUGUcgaUC-GCGAcgcGUGCGCGCgGGc -3'
miRNA:   3'- gGGCGACG---AGaCGCU---UACGCGCGgUC- -5'
28102 5' -58.5 NC_005887.1 + 32742 0.68 0.362822
Target:  5'- -gCGCggcGCUC-GCG--UGCGCGCCGGc -3'
miRNA:   3'- ggGCGa--CGAGaCGCuuACGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 3972 0.68 0.371489
Target:  5'- gCCGUUGCUC-GCGAAcgaggagGCGUGCUu- -3'
miRNA:   3'- gGGCGACGAGaCGCUUa------CGCGCGGuc -5'
28102 5' -58.5 NC_005887.1 + 11077 0.68 0.372364
Target:  5'- gCCGCUGCUCaaacgauuccgcgugGCGcaucggcuGGUGCGCGCgAa -3'
miRNA:   3'- gGGCGACGAGa--------------CGC--------UUACGCGCGgUc -5'
28102 5' -58.5 NC_005887.1 + 41949 0.67 0.380297
Target:  5'- gCCCgGCgUGCUC-GCGuGGUGCGUGCgCGGc -3'
miRNA:   3'- -GGG-CG-ACGAGaCGC-UUACGCGCG-GUC- -5'
28102 5' -58.5 NC_005887.1 + 23978 0.67 0.398326
Target:  5'- gCCCaCUGCUCgagcGCGAG-GCGgCGCuCGGg -3'
miRNA:   3'- -GGGcGACGAGa---CGCUUaCGC-GCG-GUC- -5'
28102 5' -58.5 NC_005887.1 + 10729 0.69 0.319265
Target:  5'- gCCGCUGUUCgaugGCGAcauggaaucggacugGCGCGgCGGg -3'
miRNA:   3'- gGGCGACGAGa---CGCUua-------------CGCGCgGUC- -5'
28102 5' -58.5 NC_005887.1 + 33722 0.69 0.313814
Target:  5'- gUCGauCUGCUCgaucgcgGCGAGgaucaGCGCGCCGGc -3'
miRNA:   3'- gGGC--GACGAGa------CGCUUa----CGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 21813 0.69 0.298631
Target:  5'- gUCCGCgGCgCUGCcgg-GCGCGCCGa -3'
miRNA:   3'- -GGGCGaCGaGACGcuuaCGCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 4674 0.72 0.181964
Target:  5'- aCCGCUGCgcagacgGCGAGggucugauggGCGCGCCGa -3'
miRNA:   3'- gGGCGACGaga----CGCUUa---------CGCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 29179 0.71 0.213661
Target:  5'- uCuuGCUGCgCUGCGAGgaucUGCGCgGCCu- -3'
miRNA:   3'- -GggCGACGaGACGCUU----ACGCG-CGGuc -5'
28102 5' -58.5 NC_005887.1 + 29804 0.7 0.243594
Target:  5'- gCCaguaGCUGgaagUCUGCGggUGUgcgcgGCGCCAGa -3'
miRNA:   3'- -GGg---CGACg---AGACGCuuACG-----CGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 4387 0.7 0.243594
Target:  5'- gCCCGUUGaacaagGC-AAUGCGCGCCGGc -3'
miRNA:   3'- -GGGCGACgaga--CGcUUACGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 429 0.7 0.263853
Target:  5'- gCCCGCUGUUgCUGCGcucgaacccucugGCGCGUguGg -3'
miRNA:   3'- -GGGCGACGA-GACGCuua----------CGCGCGguC- -5'
28102 5' -58.5 NC_005887.1 + 33360 0.7 0.269985
Target:  5'- uCCCGaCUGCa--GCGGAUGUgcacGCGCCGGc -3'
miRNA:   3'- -GGGC-GACGagaCGCUUACG----CGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 14684 0.7 0.276933
Target:  5'- cCCCGCacgaucggGCUCgucGCGGcggGCGgGCCGGg -3'
miRNA:   3'- -GGGCGa-------CGAGa--CGCUua-CGCgCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 26963 0.69 0.291255
Target:  5'- uCCUGCaggccGUUCgGCGAcgGUGUGCCGGu -3'
miRNA:   3'- -GGGCGa----CGAGaCGCUuaCGCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.