miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28103 5' -47 NC_005887.1 + 40622 0.66 0.975187
Target:  5'- uUC-ACCUCGUUGagcCACGCGAAc-- -3'
miRNA:   3'- uAGuUGGAGCAGCaa-GUGCGUUUaag -5'
28103 5' -47 NC_005887.1 + 32871 0.66 0.972061
Target:  5'- gGUCGGCCggGUCGUUCGuCGCc----- -3'
miRNA:   3'- -UAGUUGGagCAGCAAGU-GCGuuuaag -5'
28103 5' -47 NC_005887.1 + 39729 0.66 0.972061
Target:  5'- cUCAuCCUCGcgCGUUCuGCGCAcAUUUc -3'
miRNA:   3'- uAGUuGGAGCa-GCAAG-UGCGUuUAAG- -5'
28103 5' -47 NC_005887.1 + 22418 0.66 0.971403
Target:  5'- --gAACCUCGUCGUgcugcuguucugCAUGUGGAUUg -3'
miRNA:   3'- uagUUGGAGCAGCAa-----------GUGCGUUUAAg -5'
28103 5' -47 NC_005887.1 + 33045 0.66 0.968661
Target:  5'- uUCAuCCUCuaaGUUGUUCACGCGc---- -3'
miRNA:   3'- uAGUuGGAG---CAGCAAGUGCGUuuaag -5'
28103 5' -47 NC_005887.1 + 1267 0.67 0.964976
Target:  5'- cUCuGCCUCGUCcacgagCGCGCGGAUc- -3'
miRNA:   3'- uAGuUGGAGCAGcaa---GUGCGUUUAag -5'
28103 5' -47 NC_005887.1 + 34571 0.67 0.956717
Target:  5'- uGUCGAUCgUCG-CGUUCACGUAGc--- -3'
miRNA:   3'- -UAGUUGG-AGCaGCAAGUGCGUUuaag -5'
28103 5' -47 NC_005887.1 + 27026 0.67 0.952127
Target:  5'- -gCAACCUCGgCGagCGCGCGAc--- -3'
miRNA:   3'- uaGUUGGAGCaGCaaGUGCGUUuaag -5'
28103 5' -47 NC_005887.1 + 14452 0.67 0.950203
Target:  5'- gAUCGACCagaccgugcaaggCGUCGUgucgggccUCGCGCAGAUc- -3'
miRNA:   3'- -UAGUUGGa------------GCAGCA--------AGUGCGUUUAag -5'
28103 5' -47 NC_005887.1 + 27130 0.67 0.947221
Target:  5'- cGUCGA-CUCGUCGgcgaUCACGCGGc--- -3'
miRNA:   3'- -UAGUUgGAGCAGCa---AGUGCGUUuaag -5'
28103 5' -47 NC_005887.1 + 24419 0.67 0.947221
Target:  5'- -aCGAgCUCGuUCGUgcgCACGCAGGUc- -3'
miRNA:   3'- uaGUUgGAGC-AGCAa--GUGCGUUUAag -5'
28103 5' -47 NC_005887.1 + 41241 0.68 0.941995
Target:  5'- uUCGAgCUUGUCGUUCA-GCAGGc-- -3'
miRNA:   3'- uAGUUgGAGCAGCAAGUgCGUUUaag -5'
28103 5' -47 NC_005887.1 + 23938 0.68 0.930565
Target:  5'- cGUCGGCCUCGcggCGUcugcgCACGCAc---- -3'
miRNA:   3'- -UAGUUGGAGCa--GCAa----GUGCGUuuaag -5'
28103 5' -47 NC_005887.1 + 34449 0.68 0.924358
Target:  5'- gGUC-GCCUCGaagucgucuUCGUUCGCGCGGc--- -3'
miRNA:   3'- -UAGuUGGAGC---------AGCAAGUGCGUUuaag -5'
28103 5' -47 NC_005887.1 + 25230 0.68 0.917823
Target:  5'- -gUAGCUcggCGUCGUUCA-GCGGAUUCc -3'
miRNA:   3'- uaGUUGGa--GCAGCAAGUgCGUUUAAG- -5'
28103 5' -47 NC_005887.1 + 26167 0.69 0.910959
Target:  5'- -gCGGCCUC----UUCGCGCAGGUUCg -3'
miRNA:   3'- uaGUUGGAGcagcAAGUGCGUUUAAG- -5'
28103 5' -47 NC_005887.1 + 38313 0.7 0.863121
Target:  5'- cUCGcCCUUGUCGUUCAgGCcaccccAAUUCa -3'
miRNA:   3'- uAGUuGGAGCAGCAAGUgCGu-----UUAAG- -5'
28103 5' -47 NC_005887.1 + 35756 0.71 0.835235
Target:  5'- cUCGGCUUC-UCGUUCACGCGc---- -3'
miRNA:   3'- uAGUUGGAGcAGCAAGUGCGUuuaag -5'
28103 5' -47 NC_005887.1 + 37106 0.71 0.815356
Target:  5'- -aCAGCCUCGgCGaUCGCGCGGccgUCg -3'
miRNA:   3'- uaGUUGGAGCaGCaAGUGCGUUua-AG- -5'
28103 5' -47 NC_005887.1 + 39890 0.72 0.77952
Target:  5'- cGUCAgcGCCUCGUCGacggcgccguagCGCGCGAGgugUCa -3'
miRNA:   3'- -UAGU--UGGAGCAGCaa----------GUGCGUUUa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.