miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 3' -57.8 NC_005887.1 + 42105 0.71 0.267254
Target:  5'- uGCCGCGuCGACGAacgaGGACUuguGGCGa-- -3'
miRNA:   3'- uCGGCGC-GCUGCUg---CCUGA---CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 40870 0.69 0.354442
Target:  5'- cGCCGCGCGcgucgaagaagaaacGCGACGG--UGACGa-- -3'
miRNA:   3'- uCGGCGCGC---------------UGCUGCCugACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 40536 0.75 0.140531
Target:  5'- cGCgGCaGCGACGACGGuCUGGCGc-- -3'
miRNA:   3'- uCGgCG-CGCUGCUGCCuGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 40429 0.67 0.432404
Target:  5'- --gCGCGCGACGGCGGcacggccgcGCUcGACGg-- -3'
miRNA:   3'- ucgGCGCGCUGCUGCC---------UGA-CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 37830 0.67 0.42283
Target:  5'- uGCCGCGCaacGACGACGGcaaguugGGCGg-- -3'
miRNA:   3'- uCGGCGCG---CUGCUGCCuga----CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 37171 0.66 0.502707
Target:  5'- cGGCCGCGCGAuCGcCGaGGCUGugcuCGc-- -3'
miRNA:   3'- -UCGGCGCGCU-GCuGC-CUGACu---GCaua -5'
28105 3' -57.8 NC_005887.1 + 37030 0.67 0.451922
Target:  5'- -cCCGCGCGACGcCGaGAC-GACGg-- -3'
miRNA:   3'- ucGGCGCGCUGCuGC-CUGaCUGCaua -5'
28105 3' -57.8 NC_005887.1 + 34775 0.66 0.502707
Target:  5'- cGCCgcgcaccgcaaGCGCGACGACGGccgcccGCUGcugcucgacaACGUGg -3'
miRNA:   3'- uCGG-----------CGCGCUGCUGCC------UGAC----------UGCAUa -5'
28105 3' -57.8 NC_005887.1 + 34691 0.66 0.492341
Target:  5'- cGUCGaCGCGaACGGCGaauGGCUGGCGg-- -3'
miRNA:   3'- uCGGC-GCGC-UGCUGC---CUGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 34523 0.66 0.523716
Target:  5'- gAGCCGCGCGAacgaaGAC-GACUucgaGGCGa-- -3'
miRNA:   3'- -UCGGCGCGCUg----CUGcCUGA----CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 33021 0.66 0.482075
Target:  5'- cGCCGCGCGAgaacguauuCGcGCGGuCguugaGACGUAUg -3'
miRNA:   3'- uCGGCGCGCU---------GC-UGCCuGa----CUGCAUA- -5'
28105 3' -57.8 NC_005887.1 + 32713 0.68 0.404072
Target:  5'- uAGCCGCGCGguucacccACGGCGGgguagcgcggcGCUcGCGUGc -3'
miRNA:   3'- -UCGGCGCGC--------UGCUGCC-----------UGAcUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 32681 0.71 0.260494
Target:  5'- uGCCGCuCGACGggaagcucguguGCGGGCUGcACGUGc -3'
miRNA:   3'- uCGGCGcGCUGC------------UGCCUGAC-UGCAUa -5'
28105 3' -57.8 NC_005887.1 + 32422 0.68 0.376941
Target:  5'- uGGCCG-GCGGCGAUGuGGCcGGCGg-- -3'
miRNA:   3'- -UCGGCgCGCUGCUGC-CUGaCUGCaua -5'
28105 3' -57.8 NC_005887.1 + 31560 0.66 0.48925
Target:  5'- cGCCGCGCGcGCGGCaaucGGugacuacgaacuguGCUGACGa-- -3'
miRNA:   3'- uCGGCGCGC-UGCUG----CC--------------UGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 31227 0.68 0.394892
Target:  5'- aAGUgGCGCGAcaCGAUGGuGCaGGCGUAUg -3'
miRNA:   3'- -UCGgCGCGCU--GCUGCC-UGaCUGCAUA- -5'
28105 3' -57.8 NC_005887.1 + 30826 0.67 0.413386
Target:  5'- cGCCGCGCGcACGGuCGaGCUGACc--- -3'
miRNA:   3'- uCGGCGCGC-UGCU-GCcUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 30275 0.7 0.310806
Target:  5'- aGGCCGCGaCG-CGGCGuGGCUGGCc--- -3'
miRNA:   3'- -UCGGCGC-GCuGCUGC-CUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 29709 0.67 0.413386
Target:  5'- cGCCGCGCgugaguGACGACGGcgagaucaGCUauaugGGCGUGa -3'
miRNA:   3'- uCGGCGCG------CUGCUGCC--------UGA-----CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 29540 0.72 0.211345
Target:  5'- cGUCGCGCG-CGACGGcCUGGCa--- -3'
miRNA:   3'- uCGGCGCGCuGCUGCCuGACUGcaua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.