miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 3' -57.8 NC_005887.1 + 16474 0.69 0.341899
Target:  5'- cGaCCGCGCGGCaggauccGGCGGGCUGGuCGg-- -3'
miRNA:   3'- uC-GGCGCGCUG-------CUGCCUGACU-GCaua -5'
28105 3' -57.8 NC_005887.1 + 18022 0.79 0.072971
Target:  5'- cGCCGCGCGcuuacgcGCGcCGGACUGACGg-- -3'
miRNA:   3'- uCGGCGCGC-------UGCuGCCUGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 18479 0.69 0.351065
Target:  5'- cGUCGUGCuGACGACGGcGCcgcGGCGUAg -3'
miRNA:   3'- uCGGCGCG-CUGCUGCC-UGa--CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 19185 0.66 0.482075
Target:  5'- gAGCgGCGCgGGCGugGaGACaGGCGg-- -3'
miRNA:   3'- -UCGgCGCG-CUGCugC-CUGaCUGCaua -5'
28105 3' -57.8 NC_005887.1 + 21267 0.69 0.359549
Target:  5'- gGGCaC-CGCGGCGGCGGcguaugcgcuGCUGGCGUc- -3'
miRNA:   3'- -UCG-GcGCGCUGCUGCC----------UGACUGCAua -5'
28105 3' -57.8 NC_005887.1 + 23369 0.67 0.432404
Target:  5'- gGGCCGCaguGCGGCGuuguucuucggcGCGGGCUG-CGg-- -3'
miRNA:   3'- -UCGGCG---CGCUGC------------UGCCUGACuGCaua -5'
28105 3' -57.8 NC_005887.1 + 23503 0.69 0.326476
Target:  5'- aAGCgGCGgGAUGGCGGGCggcugcGACGa-- -3'
miRNA:   3'- -UCGgCGCgCUGCUGCCUGa-----CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 23515 0.68 0.385847
Target:  5'- cGGCCGCGCuGACGaacgcGCGGgugaGCUGgcaGCGUAc -3'
miRNA:   3'- -UCGGCGCG-CUGC-----UGCC----UGAC---UGCAUa -5'
28105 3' -57.8 NC_005887.1 + 23621 0.67 0.461861
Target:  5'- cGGCCG-GCGAUG-CGGGC-GGCGUc- -3'
miRNA:   3'- -UCGGCgCGCUGCuGCCUGaCUGCAua -5'
28105 3' -57.8 NC_005887.1 + 24590 0.66 0.523716
Target:  5'- cGGCCGCGCG-UGAUgcuuaccgucgaGGAaCUGGCGa-- -3'
miRNA:   3'- -UCGGCGCGCuGCUG------------CCU-GACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 25071 0.66 0.471913
Target:  5'- cGGCCGC-CGGCG-CGaGCUGACGc-- -3'
miRNA:   3'- -UCGGCGcGCUGCuGCcUGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 26143 0.68 0.404072
Target:  5'- cGCCGCGCGGgccgcUGACGcGCUGACc--- -3'
miRNA:   3'- uCGGCGCGCU-----GCUGCcUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 26762 0.67 0.42188
Target:  5'- cGGCCGCGCGACGGCuguaucgcgacauGGAacggcaGAUGUu- -3'
miRNA:   3'- -UCGGCGCGCUGCUG-------------CCUga----CUGCAua -5'
28105 3' -57.8 NC_005887.1 + 26969 0.73 0.200373
Target:  5'- aGGCCGUuCGGCGACGGugUGcCGg-- -3'
miRNA:   3'- -UCGGCGcGCUGCUGCCugACuGCaua -5'
28105 3' -57.8 NC_005887.1 + 28498 0.67 0.461861
Target:  5'- uAGaCGCGCGcCGGCGGGaagaUGACGa-- -3'
miRNA:   3'- -UCgGCGCGCuGCUGCCUg---ACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 29540 0.72 0.211345
Target:  5'- cGUCGCGCG-CGACGGcCUGGCa--- -3'
miRNA:   3'- uCGGCGCGCuGCUGCCuGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 29709 0.67 0.413386
Target:  5'- cGCCGCGCgugaguGACGACGGcgagaucaGCUauaugGGCGUGa -3'
miRNA:   3'- uCGGCGCG------CUGCUGCC--------UGA-----CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 30275 0.7 0.310806
Target:  5'- aGGCCGCGaCG-CGGCGuGGCUGGCc--- -3'
miRNA:   3'- -UCGGCGC-GCuGCUGC-CUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 30826 0.67 0.413386
Target:  5'- cGCCGCGCGcACGGuCGaGCUGACc--- -3'
miRNA:   3'- uCGGCGCGC-UGCU-GCcUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 31227 0.68 0.394892
Target:  5'- aAGUgGCGCGAcaCGAUGGuGCaGGCGUAUg -3'
miRNA:   3'- -UCGgCGCGCU--GCUGCC-UGaCUGCAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.