miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 3' -57.8 NC_005887.1 + 29540 0.72 0.211345
Target:  5'- cGUCGCGCG-CGACGGcCUGGCa--- -3'
miRNA:   3'- uCGGCGCGCuGCUGCCuGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 15494 0.71 0.241678
Target:  5'- uGGCCGCGCGucaGAUGGACgccggccaguuuccgGACGUc- -3'
miRNA:   3'- -UCGGCGCGCug-CUGCCUGa--------------CUGCAua -5'
28105 3' -57.8 NC_005887.1 + 1140 0.71 0.267254
Target:  5'- aAGCCGCGCGugcGCGugaaGGAuCUGACGg-- -3'
miRNA:   3'- -UCGGCGCGC---UGCug--CCU-GACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 42105 0.71 0.267254
Target:  5'- uGCCGCGuCGACGAacgaGGACUuguGGCGa-- -3'
miRNA:   3'- uCGGCGC-GCUGCUg---CCUGA---CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 14823 0.7 0.295714
Target:  5'- cGGCCGCGacgcuGAUGGCGGGCacguucgcgGGCGUGc -3'
miRNA:   3'- -UCGGCGCg----CUGCUGCCUGa--------CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 16474 0.69 0.341899
Target:  5'- cGaCCGCGCGGCaggauccGGCGGGCUGGuCGg-- -3'
miRNA:   3'- uC-GGCGCGCUG-------CUGCCUGACU-GCaua -5'
28105 3' -57.8 NC_005887.1 + 13394 0.69 0.342725
Target:  5'- aGGCCG-GCG-CGGCGGACgucGGCGg-- -3'
miRNA:   3'- -UCGGCgCGCuGCUGCCUGa--CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 1453 0.67 0.461861
Target:  5'- gGGCCcaugaugaacgaGCGCGACGcGCGGGacagGAUGUAg -3'
miRNA:   3'- -UCGG------------CGCGCUGC-UGCCUga--CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 37030 0.67 0.451922
Target:  5'- -cCCGCGCGACGcCGaGAC-GACGg-- -3'
miRNA:   3'- ucGGCGCGCUGCuGC-CUGaCUGCaua -5'
28105 3' -57.8 NC_005887.1 + 23621 0.67 0.461861
Target:  5'- cGGCCG-GCGAUG-CGGGC-GGCGUc- -3'
miRNA:   3'- -UCGGCgCGCUGCuGCCUGaCUGCAua -5'
28105 3' -57.8 NC_005887.1 + 23369 0.67 0.432404
Target:  5'- gGGCCGCaguGCGGCGuuguucuucggcGCGGGCUG-CGg-- -3'
miRNA:   3'- -UCGGCG---CGCUGC------------UGCCUGACuGCaua -5'
28105 3' -57.8 NC_005887.1 + 40429 0.67 0.432404
Target:  5'- --gCGCGCGACGGCGGcacggccgcGCUcGACGg-- -3'
miRNA:   3'- ucgGCGCGCUGCUGCC---------UGA-CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 33021 0.66 0.482075
Target:  5'- cGCCGCGCGAgaacguauuCGcGCGGuCguugaGACGUAUg -3'
miRNA:   3'- uCGGCGCGCU---------GC-UGCCuGa----CUGCAUA- -5'
28105 3' -57.8 NC_005887.1 + 25071 0.66 0.471913
Target:  5'- cGGCCGC-CGGCG-CGaGCUGACGc-- -3'
miRNA:   3'- -UCGGCGcGCUGCuGCcUGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 31560 0.66 0.48925
Target:  5'- cGCCGCGCGcGCGGCaaucGGugacuacgaacuguGCUGACGa-- -3'
miRNA:   3'- uCGGCGCGC-UGCUG----CC--------------UGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 34691 0.66 0.492341
Target:  5'- cGUCGaCGCGaACGGCGaauGGCUGGCGg-- -3'
miRNA:   3'- uCGGC-GCGC-UGCUGC---CUGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 37171 0.66 0.502707
Target:  5'- cGGCCGCGCGAuCGcCGaGGCUGugcuCGc-- -3'
miRNA:   3'- -UCGGCGCGCU-GCuGC-CUGACu---GCaua -5'
28105 3' -57.8 NC_005887.1 + 34775 0.66 0.502707
Target:  5'- cGCCgcgcaccgcaaGCGCGACGACGGccgcccGCUGcugcucgacaACGUGg -3'
miRNA:   3'- uCGG-----------CGCGCUGCUGCC------UGAC----------UGCAUa -5'
28105 3' -57.8 NC_005887.1 + 34523 0.66 0.523716
Target:  5'- gAGCCGCGCGAacgaaGAC-GACUucgaGGCGa-- -3'
miRNA:   3'- -UCGGCGCGCUg----CUGcCUGA----CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 32681 0.71 0.260494
Target:  5'- uGCCGCuCGACGggaagcucguguGCGGGCUGcACGUGc -3'
miRNA:   3'- uCGGCGcGCUGC------------UGCCUGAC-UGCAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.