miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 40421 0.67 0.272608
Target:  5'- cGGCGGCAcGgCCGcGCu--CGACgGCCAg -3'
miRNA:   3'- -CCGCCGU-CgGGC-CGuauGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 14433 0.67 0.272608
Target:  5'- aGCGGCGacucgaacagguGCCCGGCAcgcugcuucACGAuCGCCGc -3'
miRNA:   3'- cCGCCGU------------CGGGCCGUa--------UGCU-GCGGUa -5'
28108 3' -61 NC_005887.1 + 4384 0.67 0.272608
Target:  5'- uGCGGCAuGUCCGGCAgcUGGCcgGCCu- -3'
miRNA:   3'- cCGCCGU-CGGGCCGUauGCUG--CGGua -5'
28108 3' -61 NC_005887.1 + 5386 0.67 0.272608
Target:  5'- aGGCGaagcCAGCgcgaccggugaaCCGGCGgGCGGCGCCGc -3'
miRNA:   3'- -CCGCc---GUCG------------GGCCGUaUGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 12641 0.68 0.268523
Target:  5'- gGGuCGGCGGacaccaugcgcaugCCGGCGgccguCGACGCCAc -3'
miRNA:   3'- -CC-GCCGUCg-------------GGCCGUau---GCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 31886 0.68 0.265828
Target:  5'- gGGCGGCGGCaagaagGGCAUgagguuggauGCGGCGgCAg -3'
miRNA:   3'- -CCGCCGUCGgg----CCGUA----------UGCUGCgGUa -5'
28108 3' -61 NC_005887.1 + 16577 0.68 0.265828
Target:  5'- cGGCGGCGacGCgaUCGGCcUGCGAcauCGCCGa -3'
miRNA:   3'- -CCGCCGU--CG--GGCCGuAUGCU---GCGGUa -5'
28108 3' -61 NC_005887.1 + 12600 0.68 0.259185
Target:  5'- cGGCcGCGacGCUCGGCGUGCuGACGCa-- -3'
miRNA:   3'- -CCGcCGU--CGGGCCGUAUG-CUGCGgua -5'
28108 3' -61 NC_005887.1 + 18635 0.68 0.259185
Target:  5'- -uCGGCGGCCCGcuGCuguCGACGCUGUu -3'
miRNA:   3'- ccGCCGUCGGGC--CGuauGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 15351 0.68 0.259184
Target:  5'- uGCGGCAGUcucguucgCCGGCGgACGcuCGCCGc -3'
miRNA:   3'- cCGCCGUCG--------GGCCGUaUGCu-GCGGUa -5'
28108 3' -61 NC_005887.1 + 24311 0.68 0.259184
Target:  5'- cGUGGCuGCugCCGGC--ACGugGCCAg -3'
miRNA:   3'- cCGCCGuCG--GGCCGuaUGCugCGGUa -5'
28108 3' -61 NC_005887.1 + 5488 0.68 0.259184
Target:  5'- cGUGGUcGCgCCGGUcgcUGCGGCGCCGc -3'
miRNA:   3'- cCGCCGuCG-GGCCGu--AUGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 14084 0.68 0.256565
Target:  5'- cGGCGGC-GCgCCGGCGguugcggaggcgcGCGGCGCa-- -3'
miRNA:   3'- -CCGCCGuCG-GGCCGUa------------UGCUGCGgua -5'
28108 3' -61 NC_005887.1 + 21370 0.68 0.252677
Target:  5'- cGGUgGGCGuGCCCGugaauGUggGCGACGCCAg -3'
miRNA:   3'- -CCG-CCGU-CGGGC-----CGuaUGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 40970 0.68 0.252677
Target:  5'- cGCGGUAGCCCuucGGCGgcuCGuCGUCAc -3'
miRNA:   3'- cCGCCGUCGGG---CCGUau-GCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 24256 0.68 0.252677
Target:  5'- cGGCaGCAGCCaCGGCGa--GuCGCCGg -3'
miRNA:   3'- -CCGcCGUCGG-GCCGUaugCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 13707 0.68 0.242546
Target:  5'- gGGCGGcCAGCagaucaaCGGCAagccgaacaucgucGCGAUGCCGUa -3'
miRNA:   3'- -CCGCC-GUCGg------GCCGUa-------------UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 35421 0.68 0.240067
Target:  5'- cGCGuGguGCCgGGCGUGaagcuCGugGCCGg -3'
miRNA:   3'- cCGC-CguCGGgCCGUAU-----GCugCGGUa -5'
28108 3' -61 NC_005887.1 + 26208 0.68 0.233961
Target:  5'- gGGCGGCGGUggCCGGCcUGCagcuGGCGCaCGg -3'
miRNA:   3'- -CCGCCGUCG--GGCCGuAUG----CUGCG-GUa -5'
28108 3' -61 NC_005887.1 + 33106 0.68 0.233961
Target:  5'- cGgGGUcGCCCGGCuUGCGuuccuCGCCGUu -3'
miRNA:   3'- cCgCCGuCGGGCCGuAUGCu----GCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.