miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 11461 0.67 0.308597
Target:  5'- uGGCGGCGccggccgccagcGCuCCGGCugcGCuGACGCCc- -3'
miRNA:   3'- -CCGCCGU------------CG-GGCCGua-UG-CUGCGGua -5'
28108 3' -61 NC_005887.1 + 28619 0.67 0.304093
Target:  5'- cGGCGacgccuacaaauucaGCAGCCCGGCGcGCGugagcgUGCCu- -3'
miRNA:   3'- -CCGC---------------CGUCGGGCCGUaUGCu-----GCGGua -5'
28108 3' -61 NC_005887.1 + 7572 0.67 0.300379
Target:  5'- cGUGGCAGgCguauccggaCGGCAUcgcguaaGCGGCGCCGg -3'
miRNA:   3'- cCGCCGUCgG---------GCCGUA-------UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 21580 0.67 0.293781
Target:  5'- -cCGGCAG-CCGGCGU-CGuuGCGCCGa -3'
miRNA:   3'- ccGCCGUCgGGCCGUAuGC--UGCGGUa -5'
28108 3' -61 NC_005887.1 + 15039 0.67 0.293781
Target:  5'- cGCGGCcuGCgCGGCGUA-GGCGUCGa -3'
miRNA:   3'- cCGCCGu-CGgGCCGUAUgCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 32732 0.67 0.293781
Target:  5'- cGGCggGGUAGCgCGGCGcucgcgUGCG-CGCCGg -3'
miRNA:   3'- -CCG--CCGUCGgGCCGU------AUGCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 27240 0.67 0.293781
Target:  5'- cGCGGCGcaacugcaucgcGCgCCGGCccGCGuCGCCAa -3'
miRNA:   3'- cCGCCGU------------CG-GGCCGuaUGCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 8845 0.67 0.289446
Target:  5'- cGCgGGCAGCuugugaacgCCGGCGcgcccgucgagaucGCGACGCCGUa -3'
miRNA:   3'- cCG-CCGUCG---------GGCCGUa-------------UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 13578 0.67 0.286584
Target:  5'- uGGCGcGCAuGCCCGuGCcgGCGAccuCGUCGa -3'
miRNA:   3'- -CCGC-CGU-CGGGC-CGuaUGCU---GCGGUa -5'
28108 3' -61 NC_005887.1 + 2575 0.67 0.286584
Target:  5'- uGCGGCAGUCCGGgugcACGAgcaggccgggcuCGCCGUc -3'
miRNA:   3'- cCGCCGUCGGGCCgua-UGCU------------GCGGUA- -5'
28108 3' -61 NC_005887.1 + 1464 0.67 0.286584
Target:  5'- uGCGaGCaggAGCCCgacgccgacGGCGUGCGGCGCUc- -3'
miRNA:   3'- cCGC-CG---UCGGG---------CCGUAUGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 40826 0.67 0.286584
Target:  5'- cGGCGGC-GCgCGGCGcgccaacgGCGAuCGCCu- -3'
miRNA:   3'- -CCGCCGuCGgGCCGUa-------UGCU-GCGGua -5'
28108 3' -61 NC_005887.1 + 15626 0.67 0.286584
Target:  5'- aGCaGGCGGCCgGGCucgccgaucAgGGCGCCGUg -3'
miRNA:   3'- cCG-CCGUCGGgCCGua-------UgCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 15738 0.67 0.285161
Target:  5'- cGGCGGUgagcuggucgAGCUCGGCGcgcaucugcgacACGGCGCCc- -3'
miRNA:   3'- -CCGCCG----------UCGGGCCGUa-----------UGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 11379 0.67 0.279527
Target:  5'- gGGCGucagcGCAGCCggagcgcuggCGGCcgGCGcCGCCAa -3'
miRNA:   3'- -CCGC-----CGUCGG----------GCCGuaUGCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 37682 0.67 0.279527
Target:  5'- aGCaGCcGCCCcGCAUgcaaGCGACGCCGg -3'
miRNA:   3'- cCGcCGuCGGGcCGUA----UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 38219 0.67 0.279527
Target:  5'- cGCGcGCAGCCUuGC--GCGugGCCGg -3'
miRNA:   3'- cCGC-CGUCGGGcCGuaUGCugCGGUa -5'
28108 3' -61 NC_005887.1 + 14030 0.67 0.279527
Target:  5'- cGGCGcGCcGCCgGcGCAgccugagACGAUGCCGUu -3'
miRNA:   3'- -CCGC-CGuCGGgC-CGUa------UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 7124 0.67 0.279527
Target:  5'- --aGGCGGggCGGCGcUGCGGCGCCGUu -3'
miRNA:   3'- ccgCCGUCggGCCGU-AUGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 41930 0.67 0.276743
Target:  5'- aGCGGCucgcagcugagcuGCCCGGCGUGCucGCGUgGUg -3'
miRNA:   3'- cCGCCGu------------CGGGCCGUAUGc-UGCGgUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.