miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 36533 0.7 0.174626
Target:  5'- cGGCGGCAGguauuucgcgaauUCCGGCAgGCGuucguGCGCCu- -3'
miRNA:   3'- -CCGCCGUC-------------GGGCCGUaUGC-----UGCGGua -5'
28108 3' -61 NC_005887.1 + 35861 0.7 0.184717
Target:  5'- uGCGGauugcGCUCGGCAgacaccGCGACGCCGc -3'
miRNA:   3'- cCGCCgu---CGGGCCGUa-----UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 23446 0.7 0.184717
Target:  5'- aGCGGCAGCgCGaGCAgcaaaagcaucUGCGAgCGCCGc -3'
miRNA:   3'- cCGCCGUCGgGC-CGU-----------AUGCU-GCGGUa -5'
28108 3' -61 NC_005887.1 + 17341 0.7 0.188194
Target:  5'- cGCGGCGccgcccgacgucucGCCCGGCAcgaucuuauUGACGCCGc -3'
miRNA:   3'- cCGCCGU--------------CGGGCCGUau-------GCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 15688 0.7 0.194803
Target:  5'- -uCGGCgAGCCCGGCcgccugcugcGCGACGCCc- -3'
miRNA:   3'- ccGCCG-UCGGGCCGua--------UGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 22846 0.7 0.194803
Target:  5'- aGCGGCcGCgCCGGCGU-CGA-GCCAa -3'
miRNA:   3'- cCGCCGuCG-GGCCGUAuGCUgCGGUa -5'
28108 3' -61 NC_005887.1 + 39619 0.69 0.200025
Target:  5'- aGGCgGGCAGCCCgucgcgcggauuGGgGUAcagagcCGGCGCCAg -3'
miRNA:   3'- -CCG-CCGUCGGG------------CCgUAU------GCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 21879 0.69 0.200025
Target:  5'- -uCGGCGcGCCCGGCAgcgccGCGgACGUCGUg -3'
miRNA:   3'- ccGCCGU-CGGGCCGUa----UGC-UGCGGUA- -5'
28108 3' -61 NC_005887.1 + 16480 0.69 0.205367
Target:  5'- cGCGGCAGgaUCCGGCGggcuggucgGCGAUGUCGc -3'
miRNA:   3'- cCGCCGUC--GGGCCGUa--------UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 26914 0.69 0.205367
Target:  5'- cGGCGGCaacGGCuaCCGGCAgACG-CGCCc- -3'
miRNA:   3'- -CCGCCG---UCG--GGCCGUaUGCuGCGGua -5'
28108 3' -61 NC_005887.1 + 10987 0.69 0.210833
Target:  5'- gGGCGugaGCAGgCCGGCcgACGucaucuGCGCCGg -3'
miRNA:   3'- -CCGC---CGUCgGGCCGuaUGC------UGCGGUa -5'
28108 3' -61 NC_005887.1 + 26543 0.69 0.216424
Target:  5'- cGGcCGGCAuGCCCGuGCu--CGugGCCu- -3'
miRNA:   3'- -CC-GCCGU-CGGGC-CGuauGCugCGGua -5'
28108 3' -61 NC_005887.1 + 621 0.69 0.218696
Target:  5'- cGGCGGUcuucgcgcuguauccGGCgCGGCGcGCGGCgGCCGa -3'
miRNA:   3'- -CCGCCG---------------UCGgGCCGUaUGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 27319 0.69 0.222141
Target:  5'- uGGCGacGCGGgCCGGCGcGCGAUGCa-- -3'
miRNA:   3'- -CCGC--CGUCgGGCCGUaUGCUGCGgua -5'
28108 3' -61 NC_005887.1 + 18077 0.68 0.233961
Target:  5'- aGGCGaC-GCCCGGCAaguaugGgGACGCCGa -3'
miRNA:   3'- -CCGCcGuCGGGCCGUa-----UgCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 27106 0.68 0.233961
Target:  5'- gGGCGGCAGCgUGcGCGgucGCGcgcuCGCCGa -3'
miRNA:   3'- -CCGCCGUCGgGC-CGUa--UGCu---GCGGUa -5'
28108 3' -61 NC_005887.1 + 26208 0.68 0.233961
Target:  5'- gGGCGGCGGUggCCGGCcUGCagcuGGCGCaCGg -3'
miRNA:   3'- -CCGCCGUCG--GGCCGuAUG----CUGCG-GUa -5'
28108 3' -61 NC_005887.1 + 33106 0.68 0.233961
Target:  5'- cGgGGUcGCCCGGCuUGCGuuccuCGCCGUu -3'
miRNA:   3'- cCgCCGuCGGGCCGuAUGCu----GCGGUA- -5'
28108 3' -61 NC_005887.1 + 35421 0.68 0.240067
Target:  5'- cGCGuGguGCCgGGCGUGaagcuCGugGCCGg -3'
miRNA:   3'- cCGC-CguCGGgCCGUAU-----GCugCGGUa -5'
28108 3' -61 NC_005887.1 + 13707 0.68 0.242546
Target:  5'- gGGCGGcCAGCagaucaaCGGCAagccgaacaucgucGCGAUGCCGUa -3'
miRNA:   3'- -CCGCC-GUCGg------GCCGUa-------------UGCUGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.