miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 11461 0.67 0.308597
Target:  5'- uGGCGGCGccggccgccagcGCuCCGGCugcGCuGACGCCc- -3'
miRNA:   3'- -CCGCCGU------------CG-GGCCGua-UG-CUGCGGua -5'
28108 3' -61 NC_005887.1 + 12272 0.71 0.144853
Target:  5'- -cCGGCGcGCCCGGC--GCGGCGCUGUc -3'
miRNA:   3'- ccGCCGU-CGGGCCGuaUGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 12600 0.68 0.259185
Target:  5'- cGGCcGCGacGCUCGGCGUGCuGACGCa-- -3'
miRNA:   3'- -CCGcCGU--CGGGCCGUAUG-CUGCGgua -5'
28108 3' -61 NC_005887.1 + 12641 0.68 0.268523
Target:  5'- gGGuCGGCGGacaccaugcgcaugCCGGCGgccguCGACGCCAc -3'
miRNA:   3'- -CC-GCCGUCg-------------GGCCGUau---GCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 13511 0.66 0.339918
Target:  5'- aGGuCGcCGGCaCgGGCAUGCG-CGCCAc -3'
miRNA:   3'- -CC-GCcGUCG-GgCCGUAUGCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 13578 0.67 0.286584
Target:  5'- uGGCGcGCAuGCCCGuGCcgGCGAccuCGUCGa -3'
miRNA:   3'- -CCGC-CGU-CGGGC-CGuaUGCU---GCGGUa -5'
28108 3' -61 NC_005887.1 + 13614 0.71 0.148862
Target:  5'- uGCuGGCAGCgCGGCGcGCGGCgGCCGc -3'
miRNA:   3'- cCG-CCGUCGgGCCGUaUGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 13707 0.68 0.242546
Target:  5'- gGGCGGcCAGCagaucaaCGGCAagccgaacaucgucGCGAUGCCGUa -3'
miRNA:   3'- -CCGCC-GUCGg------GCCGUa-------------UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 14030 0.67 0.279527
Target:  5'- cGGCGcGCcGCCgGcGCAgccugagACGAUGCCGUu -3'
miRNA:   3'- -CCGC-CGuCGGgC-CGUa------UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 14084 0.68 0.256565
Target:  5'- cGGCGGC-GCgCCGGCGguugcggaggcgcGCGGCGCa-- -3'
miRNA:   3'- -CCGCCGuCG-GGCCGUa------------UGCUGCGgua -5'
28108 3' -61 NC_005887.1 + 14204 0.72 0.133413
Target:  5'- gGGC-GCGGCCuCGGaCAggGCGGCGCCGc -3'
miRNA:   3'- -CCGcCGUCGG-GCC-GUa-UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 14433 0.67 0.272608
Target:  5'- aGCGGCGacucgaacagguGCCCGGCAcgcugcuucACGAuCGCCGc -3'
miRNA:   3'- cCGCCGU------------CGGGCCGUa--------UGCU-GCGGUa -5'
28108 3' -61 NC_005887.1 + 14706 0.66 0.331876
Target:  5'- cGGCgGGCgGGCCgGGCGcgGCGAuCGCgCAg -3'
miRNA:   3'- -CCG-CCG-UCGGgCCGUa-UGCU-GCG-GUa -5'
28108 3' -61 NC_005887.1 + 14998 0.66 0.339918
Target:  5'- -aCGGCAGCgCgCGGCGUGCGucgauCGCgAg -3'
miRNA:   3'- ccGCCGUCG-G-GCCGUAUGCu----GCGgUa -5'
28108 3' -61 NC_005887.1 + 15039 0.67 0.293781
Target:  5'- cGCGGCcuGCgCGGCGUA-GGCGUCGa -3'
miRNA:   3'- cCGCCGu-CGgGCCGUAUgCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 15351 0.68 0.259184
Target:  5'- uGCGGCAGUcucguucgCCGGCGgACGcuCGCCGc -3'
miRNA:   3'- cCGCCGUCG--------GGCCGUaUGCu-GCGGUa -5'
28108 3' -61 NC_005887.1 + 15626 0.67 0.286584
Target:  5'- aGCaGGCGGCCgGGCucgccgaucAgGGCGCCGUg -3'
miRNA:   3'- cCG-CCGUCGGgCCGua-------UgCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 15688 0.7 0.194803
Target:  5'- -uCGGCgAGCCCGGCcgccugcugcGCGACGCCc- -3'
miRNA:   3'- ccGCCG-UCGGGCCGua--------UGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 15738 0.67 0.285161
Target:  5'- cGGCGGUgagcuggucgAGCUCGGCGcgcaucugcgacACGGCGCCc- -3'
miRNA:   3'- -CCGCCG----------UCGGGCCGUa-----------UGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 15878 0.66 0.323975
Target:  5'- aGGCGcaccaGCAGCUCGGUgcgcuCGACGCgCAg -3'
miRNA:   3'- -CCGC-----CGUCGGGCCGuau--GCUGCG-GUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.