miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 621 0.69 0.218696
Target:  5'- cGGCGGUcuucgcgcuguauccGGCgCGGCGcGCGGCgGCCGa -3'
miRNA:   3'- -CCGCCG---------------UCGgGCCGUaUGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 721 0.66 0.348099
Target:  5'- uGGuCGGCGGUCaUGcGCGUGCGcuCGCCGc -3'
miRNA:   3'- -CC-GCCGUCGG-GC-CGUAUGCu-GCGGUa -5'
28108 3' -61 NC_005887.1 + 799 0.72 0.132316
Target:  5'- uGGCGGCAGCaCCGGUgcugGUACGAgaucagcugguucaCGUCGg -3'
miRNA:   3'- -CCGCCGUCG-GGCCG----UAUGCU--------------GCGGUa -5'
28108 3' -61 NC_005887.1 + 1464 0.67 0.286584
Target:  5'- uGCGaGCaggAGCCCgacgccgacGGCGUGCGGCGCUc- -3'
miRNA:   3'- cCGC-CG---UCGGG---------CCGUAUGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 2575 0.67 0.286584
Target:  5'- uGCGGCAGUCCGGgugcACGAgcaggccgggcuCGCCGUc -3'
miRNA:   3'- cCGCCGUCGGGCCgua-UGCU------------GCGGUA- -5'
28108 3' -61 NC_005887.1 + 2991 0.71 0.157183
Target:  5'- cGGCGcuugcGCAGCuuGGCG-GCGGCGUCGUu -3'
miRNA:   3'- -CCGC-----CGUCGggCCGUaUGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 3876 1.08 0.000213
Target:  5'- cGGCGGCAGCCCGGCAUACGACGCCAUg -3'
miRNA:   3'- -CCGCCGUCGGGCCGUAUGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 4384 0.67 0.272608
Target:  5'- uGCGGCAuGUCCGGCAgcUGGCcgGCCu- -3'
miRNA:   3'- cCGCCGU-CGGGCCGUauGCUG--CGGua -5'
28108 3' -61 NC_005887.1 + 4525 0.74 0.097699
Target:  5'- cGCGGCAGCCgGGUcgaacugcgagACGAUGCCGg -3'
miRNA:   3'- cCGCCGUCGGgCCGua---------UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 4529 0.66 0.331876
Target:  5'- cGGCGGCGuCCCGGUcgagGCGAUGagcaCCGa -3'
miRNA:   3'- -CCGCCGUcGGGCCGua--UGCUGC----GGUa -5'
28108 3' -61 NC_005887.1 + 5386 0.67 0.272608
Target:  5'- aGGCGaagcCAGCgcgaccggugaaCCGGCGgGCGGCGCCGc -3'
miRNA:   3'- -CCGCc---GUCG------------GGCCGUaUGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 5488 0.68 0.259184
Target:  5'- cGUGGUcGCgCCGGUcgcUGCGGCGCCGc -3'
miRNA:   3'- cCGCCGuCG-GGCCGu--AUGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 6608 0.73 0.109888
Target:  5'- cGGCGaCAGCCCcgugaauucGGCGgggGCGAUGCCGUc -3'
miRNA:   3'- -CCGCcGUCGGG---------CCGUa--UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 7124 0.67 0.279527
Target:  5'- --aGGCGGggCGGCGcUGCGGCGCCGUu -3'
miRNA:   3'- ccgCCGUCggGCCGU-AUGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 7572 0.67 0.300379
Target:  5'- cGUGGCAGgCguauccggaCGGCAUcgcguaaGCGGCGCCGg -3'
miRNA:   3'- cCGCCGUCgG---------GCCGUA-------UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 8845 0.67 0.289446
Target:  5'- cGCgGGCAGCuugugaacgCCGGCGcgcccgucgagaucGCGACGCCGUa -3'
miRNA:   3'- cCG-CCGUCG---------GGCCGUa-------------UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 9276 0.71 0.152971
Target:  5'- -aCGGCGG-UCGGCAcgGCGACGCCGc -3'
miRNA:   3'- ccGCCGUCgGGCCGUa-UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 10987 0.69 0.210833
Target:  5'- gGGCGugaGCAGgCCGGCcgACGucaucuGCGCCGg -3'
miRNA:   3'- -CCGC---CGUCgGGCCGuaUGC------UGCGGUa -5'
28108 3' -61 NC_005887.1 + 11307 0.74 0.098249
Target:  5'- aGCGGcCGGCUCGGCA-GCGAgCGCCGc -3'
miRNA:   3'- cCGCC-GUCGGGCCGUaUGCU-GCGGUa -5'
28108 3' -61 NC_005887.1 + 11379 0.67 0.279527
Target:  5'- gGGCGucagcGCAGCCggagcgcuggCGGCcgGCGcCGCCAa -3'
miRNA:   3'- -CCGC-----CGUCGG----------GCCGuaUGCuGCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.