miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 12600 0.68 0.259185
Target:  5'- cGGCcGCGacGCUCGGCGUGCuGACGCa-- -3'
miRNA:   3'- -CCGcCGU--CGGGCCGUAUG-CUGCGgua -5'
28108 3' -61 NC_005887.1 + 36533 0.7 0.174626
Target:  5'- cGGCGGCAGguauuucgcgaauUCCGGCAgGCGuucguGCGCCu- -3'
miRNA:   3'- -CCGCCGUC-------------GGGCCGUaUGC-----UGCGGua -5'
28108 3' -61 NC_005887.1 + 35861 0.7 0.184717
Target:  5'- uGCGGauugcGCUCGGCAgacaccGCGACGCCGc -3'
miRNA:   3'- cCGCCgu---CGGGCCGUa-----UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 16480 0.69 0.205367
Target:  5'- cGCGGCAGgaUCCGGCGggcuggucgGCGAUGUCGc -3'
miRNA:   3'- cCGCCGUC--GGGCCGUa--------UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 18077 0.68 0.233961
Target:  5'- aGGCGaC-GCCCGGCAaguaugGgGACGCCGa -3'
miRNA:   3'- -CCGCcGuCGGGCCGUa-----UgCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 26208 0.68 0.233961
Target:  5'- gGGCGGCGGUggCCGGCcUGCagcuGGCGCaCGg -3'
miRNA:   3'- -CCGCCGUCG--GGCCGuAUG----CUGCG-GUa -5'
28108 3' -61 NC_005887.1 + 33106 0.68 0.233961
Target:  5'- cGgGGUcGCCCGGCuUGCGuuccuCGCCGUu -3'
miRNA:   3'- cCgCCGuCGGGCCGuAUGCu----GCGGUA- -5'
28108 3' -61 NC_005887.1 + 13707 0.68 0.242546
Target:  5'- gGGCGGcCAGCagaucaaCGGCAagccgaacaucgucGCGAUGCCGUa -3'
miRNA:   3'- -CCGCC-GUCGg------GCCGUa-------------UGCUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 24256 0.68 0.252677
Target:  5'- cGGCaGCAGCCaCGGCGa--GuCGCCGg -3'
miRNA:   3'- -CCGcCGUCGG-GCCGUaugCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 9276 0.71 0.152971
Target:  5'- -aCGGCGG-UCGGCAcgGCGACGCCGc -3'
miRNA:   3'- ccGCCGUCgGGCCGUa-UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 25494 0.71 0.152971
Target:  5'- aGCGGCGGCUCGGacgAUGGCGCgGc -3'
miRNA:   3'- cCGCCGUCGGGCCguaUGCUGCGgUa -5'
28108 3' -61 NC_005887.1 + 13614 0.71 0.148862
Target:  5'- uGCuGGCAGCgCGGCGcGCGGCgGCCGc -3'
miRNA:   3'- cCG-CCGUCGgGCCGUaUGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 29878 0.75 0.074047
Target:  5'- uGCGGCAGgCCGaGCGUACGGCGUUu- -3'
miRNA:   3'- cCGCCGUCgGGC-CGUAUGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 23466 0.75 0.076184
Target:  5'- -cCGGaAGCCCGGCAgccgGCGACGCCc- -3'
miRNA:   3'- ccGCCgUCGGGCCGUa---UGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 41597 0.74 0.095526
Target:  5'- aGCGGCGGCCCaGGU--GCGGCgGCCGg -3'
miRNA:   3'- cCGCCGUCGGG-CCGuaUGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 11307 0.74 0.098249
Target:  5'- aGCGGcCGGCUCGGCA-GCGAgCGCCGc -3'
miRNA:   3'- cCGCC-GUCGGGCCGUaUGCU-GCGGUa -5'
28108 3' -61 NC_005887.1 + 25952 0.73 0.101045
Target:  5'- -aCGGUGGCCCGGCA---GACGCCGa -3'
miRNA:   3'- ccGCCGUCGGGCCGUaugCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 18552 0.72 0.126254
Target:  5'- gGGCGGCGGCgCCGGCuucgcggGCGACauGCUc- -3'
miRNA:   3'- -CCGCCGUCG-GGCCGua-----UGCUG--CGGua -5'
28108 3' -61 NC_005887.1 + 14204 0.72 0.133413
Target:  5'- gGGC-GCGGCCuCGGaCAggGCGGCGCCGc -3'
miRNA:   3'- -CCGcCGUCGG-GCC-GUa-UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 17251 0.71 0.144458
Target:  5'- cGGCGGCGucaauaagaucguGCCgGGCGagacgucggGCGGCGCCGc -3'
miRNA:   3'- -CCGCCGU-------------CGGgCCGUa--------UGCUGCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.