miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 30597 0.66 0.356421
Target:  5'- cGUGGCGuCUCGGCcgACGGcCGCCu- -3'
miRNA:   3'- cCGCCGUcGGGCCGuaUGCU-GCGGua -5'
28108 3' -61 NC_005887.1 + 14433 0.67 0.272608
Target:  5'- aGCGGCGacucgaacagguGCCCGGCAcgcugcuucACGAuCGCCGc -3'
miRNA:   3'- cCGCCGU------------CGGGCCGUa--------UGCU-GCGGUa -5'
28108 3' -61 NC_005887.1 + 12641 0.68 0.268523
Target:  5'- gGGuCGGCGGacaccaugcgcaugCCGGCGgccguCGACGCCAc -3'
miRNA:   3'- -CC-GCCGUCg-------------GGCCGUau---GCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 32608 0.78 0.049572
Target:  5'- cGCGGUgaaAGCCUGGCAcACGugGCCGg -3'
miRNA:   3'- cCGCCG---UCGGGCCGUaUGCugCGGUa -5'
28108 3' -61 NC_005887.1 + 14998 0.66 0.339918
Target:  5'- -aCGGCAGCgCgCGGCGUGCGucgauCGCgAg -3'
miRNA:   3'- ccGCCGUCG-G-GCCGUAUGCu----GCGgUa -5'
28108 3' -61 NC_005887.1 + 25074 0.66 0.339918
Target:  5'- cGGCGGCcGCCgGcGCGaGCuGACGCUc- -3'
miRNA:   3'- -CCGCCGuCGGgC-CGUaUG-CUGCGGua -5'
28108 3' -61 NC_005887.1 + 41215 0.66 0.331876
Target:  5'- uGCGGCuuUCUGGCAcGCGGCGCa-- -3'
miRNA:   3'- cCGCCGucGGGCCGUaUGCUGCGgua -5'
28108 3' -61 NC_005887.1 + 11461 0.67 0.308597
Target:  5'- uGGCGGCGccggccgccagcGCuCCGGCugcGCuGACGCCc- -3'
miRNA:   3'- -CCGCCGU------------CG-GGCCGua-UG-CUGCGGua -5'
28108 3' -61 NC_005887.1 + 21580 0.67 0.293781
Target:  5'- -cCGGCAG-CCGGCGU-CGuuGCGCCGa -3'
miRNA:   3'- ccGCCGUCgGGCCGUAuGC--UGCGGUa -5'
28108 3' -61 NC_005887.1 + 4384 0.67 0.272608
Target:  5'- uGCGGCAuGUCCGGCAgcUGGCcgGCCu- -3'
miRNA:   3'- cCGCCGU-CGGGCCGUauGCUG--CGGua -5'
28108 3' -61 NC_005887.1 + 2575 0.67 0.286584
Target:  5'- uGCGGCAGUCCGGgugcACGAgcaggccgggcuCGCCGUc -3'
miRNA:   3'- cCGCCGUCGGGCCgua-UGCU------------GCGGUA- -5'
28108 3' -61 NC_005887.1 + 15039 0.67 0.293781
Target:  5'- cGCGGCcuGCgCGGCGUA-GGCGUCGa -3'
miRNA:   3'- cCGCCGu-CGgGCCGUAUgCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 18034 0.66 0.348099
Target:  5'- uGCGGCcgaugccggcgAGCCCGcGCAUcauguGCGAcugaaaCGCCGUg -3'
miRNA:   3'- cCGCCG-----------UCGGGC-CGUA-----UGCU------GCGGUA- -5'
28108 3' -61 NC_005887.1 + 13578 0.67 0.286584
Target:  5'- uGGCGcGCAuGCCCGuGCcgGCGAccuCGUCGa -3'
miRNA:   3'- -CCGC-CGU-CGGGC-CGuaUGCU---GCGGUa -5'
28108 3' -61 NC_005887.1 + 721 0.66 0.348099
Target:  5'- uGGuCGGCGGUCaUGcGCGUGCGcuCGCCGc -3'
miRNA:   3'- -CC-GCCGUCGG-GC-CGUAUGCu-GCGGUa -5'
28108 3' -61 NC_005887.1 + 28619 0.67 0.304093
Target:  5'- cGGCGacgccuacaaauucaGCAGCCCGGCGcGCGugagcgUGCCu- -3'
miRNA:   3'- -CCGC---------------CGUCGGGCCGUaUGCu-----GCGGua -5'
28108 3' -61 NC_005887.1 + 15738 0.67 0.285161
Target:  5'- cGGCGGUgagcuggucgAGCUCGGCGcgcaucugcgacACGGCGCCc- -3'
miRNA:   3'- -CCGCCG----------UCGGGCCGUa-----------UGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 40421 0.67 0.272608
Target:  5'- cGGCGGCAcGgCCGcGCu--CGACgGCCAg -3'
miRNA:   3'- -CCGCCGU-CgGGC-CGuauGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 17138 0.66 0.348099
Target:  5'- aGCGGUcgAGCagCGGCAUgACGGCGuCCGc -3'
miRNA:   3'- cCGCCG--UCGg-GCCGUA-UGCUGC-GGUa -5'
28108 3' -61 NC_005887.1 + 16015 0.67 0.308597
Target:  5'- aGCGGC-GUgCGGC--GCGugGCCGg -3'
miRNA:   3'- cCGCCGuCGgGCCGuaUGCugCGGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.