Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28108 | 5' | -51.6 | NC_005887.1 | + | 34679 | 0.75 | 0.396631 |
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Target: 5'- ---cGGCGAAUGGC-UGGCGGgcaaggaAGGCCg -3' miRNA: 3'- ccuaCCGCUUGCUGuACCGCU-------UCUGG- -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 23496 | 0.75 | 0.36996 |
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Target: 5'- gGGAUGGCGGGCGGCu--GCGAcGAgCu -3' miRNA: 3'- -CCUACCGCUUGCUGuacCGCUuCUgG- -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 39042 | 0.77 | 0.295263 |
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Target: 5'- cGGAgucaGCGAACGACAUGGCGucGuuCg -3' miRNA: 3'- -CCUac--CGCUUGCUGUACCGCuuCugG- -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 30476 | 0.77 | 0.270974 |
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Target: 5'- uGAUGGUGGGCGaacucgGCGUGGCGAAGuuuucagaggcgacGCCg -3' miRNA: 3'- cCUACCGCUUGC------UGUACCGCUUC--------------UGG- -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 34947 | 0.78 | 0.259101 |
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Target: 5'- aGGGcagcGCGAACGACAaGGCGAucgAGGCCg -3' miRNA: 3'- -CCUac--CGCUUGCUGUaCCGCU---UCUGG- -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 5619 | 0.79 | 0.208859 |
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Target: 5'- aGGAU-GCGGGCGACGcGGUGAAGGCg -3' miRNA: 3'- -CCUAcCGCUUGCUGUaCCGCUUCUGg -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 4036 | 0.82 | 0.141084 |
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Target: 5'- gGGGUGGCcuGAACGACAagGGCGAGGAa- -3' miRNA: 3'- -CCUACCG--CUUGCUGUa-CCGCUUCUgg -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 15158 | 0.82 | 0.133229 |
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Target: 5'- ---aGGCGcucGACGGCAUGGCGAAGuACCu -3' miRNA: 3'- ccuaCCGC---UUGCUGUACCGCUUC-UGG- -5' |
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| 28108 | 5' | -51.6 | NC_005887.1 | + | 3913 | 1.16 | 0.000665 |
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Target: 5'- cGGAUGGCGAACGACAUGGCGAAGACCa -3' miRNA: 3'- -CCUACCGCUUGCUGUACCGCUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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