miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 5' -51.6 NC_005887.1 + 3913 1.16 0.000665
Target:  5'- cGGAUGGCGAACGACAUGGCGAAGACCa -3'
miRNA:   3'- -CCUACCGCUUGCUGUACCGCUUCUGG- -5'
28108 5' -51.6 NC_005887.1 + 15158 0.82 0.133229
Target:  5'- ---aGGCGcucGACGGCAUGGCGAAGuACCu -3'
miRNA:   3'- ccuaCCGC---UUGCUGUACCGCUUC-UGG- -5'
28108 5' -51.6 NC_005887.1 + 4036 0.82 0.141084
Target:  5'- gGGGUGGCcuGAACGACAagGGCGAGGAa- -3'
miRNA:   3'- -CCUACCG--CUUGCUGUa-CCGCUUCUgg -5'
28108 5' -51.6 NC_005887.1 + 5619 0.79 0.208859
Target:  5'- aGGAU-GCGGGCGACGcGGUGAAGGCg -3'
miRNA:   3'- -CCUAcCGCUUGCUGUaCCGCUUCUGg -5'
28108 5' -51.6 NC_005887.1 + 34947 0.78 0.259101
Target:  5'- aGGGcagcGCGAACGACAaGGCGAucgAGGCCg -3'
miRNA:   3'- -CCUac--CGCUUGCUGUaCCGCU---UCUGG- -5'
28108 5' -51.6 NC_005887.1 + 30476 0.77 0.270974
Target:  5'- uGAUGGUGGGCGaacucgGCGUGGCGAAGuuuucagaggcgacGCCg -3'
miRNA:   3'- cCUACCGCUUGC------UGUACCGCUUC--------------UGG- -5'
28108 5' -51.6 NC_005887.1 + 39042 0.77 0.295263
Target:  5'- cGGAgucaGCGAACGACAUGGCGucGuuCg -3'
miRNA:   3'- -CCUac--CGCUUGCUGUACCGCuuCugG- -5'
28108 5' -51.6 NC_005887.1 + 23496 0.75 0.36996
Target:  5'- gGGAUGGCGGGCGGCu--GCGAcGAgCu -3'
miRNA:   3'- -CCUACCGCUUGCUGuacCGCUuCUgG- -5'
28108 5' -51.6 NC_005887.1 + 34679 0.75 0.396631
Target:  5'- ---cGGCGAAUGGC-UGGCGGgcaaggaAGGCCg -3'
miRNA:   3'- ccuaCCGCUUGCUGuACCGCU-------UCUGG- -5'
28108 5' -51.6 NC_005887.1 + 17402 0.73 0.477283
Target:  5'- --cUGGuCGAucacgucgGCGGCAUGGCGAAGAa- -3'
miRNA:   3'- ccuACC-GCU--------UGCUGUACCGCUUCUgg -5'
28108 5' -51.6 NC_005887.1 + 36033 0.73 0.477284
Target:  5'- ---gGGCGAACG-CggGGCGAAGGgCa -3'
miRNA:   3'- ccuaCCGCUUGCuGuaCCGCUUCUgG- -5'
28108 5' -51.6 NC_005887.1 + 7364 0.73 0.498434
Target:  5'- cGGAcGGCGAcACGACGacccacagcgGGCGGccgGGGCCg -3'
miRNA:   3'- -CCUaCCGCU-UGCUGUa---------CCGCU---UCUGG- -5'
28108 5' -51.6 NC_005887.1 + 3779 0.72 0.518906
Target:  5'- cGGAUcgcggucGGCGcgcggcucGACGGCGUGGUaGAAGAUCg -3'
miRNA:   3'- -CCUA-------CCGC--------UUGCUGUACCG-CUUCUGG- -5'
28108 5' -51.6 NC_005887.1 + 40805 0.72 0.552982
Target:  5'- ---cGGCGAucgccuCGACGcgGGCGgcGACCu -3'
miRNA:   3'- ccuaCCGCUu-----GCUGUa-CCGCuuCUGG- -5'
28108 5' -51.6 NC_005887.1 + 41727 0.71 0.597858
Target:  5'- cGGgcGGCGAuccgauccCGGCGcgcgggcucUGGuCGAAGACCa -3'
miRNA:   3'- -CCuaCCGCUu-------GCUGU---------ACC-GCUUCUGG- -5'
28108 5' -51.6 NC_005887.1 + 9478 0.71 0.609178
Target:  5'- cGGUGGCGAcgaACGACccGGCc--GACCc -3'
miRNA:   3'- cCUACCGCU---UGCUGuaCCGcuuCUGG- -5'
28108 5' -51.6 NC_005887.1 + 2339 0.7 0.620519
Target:  5'- -uAUGGCGAucCGGCG-GGCGAccagcgcucgcAGGCCg -3'
miRNA:   3'- ccUACCGCUu-GCUGUaCCGCU-----------UCUGG- -5'
28108 5' -51.6 NC_005887.1 + 19824 0.7 0.631871
Target:  5'- cGGG-GGCGucGACGACAcacUGGCGAuccaagAGugCa -3'
miRNA:   3'- -CCUaCCGC--UUGCUGU---ACCGCU------UCugG- -5'
28108 5' -51.6 NC_005887.1 + 25727 0.7 0.631872
Target:  5'- cGAUGGCGAcgcgcuGCGGCuggcGGUGAAGcucaACCu -3'
miRNA:   3'- cCUACCGCU------UGCUGua--CCGCUUC----UGG- -5'
28108 5' -51.6 NC_005887.1 + 17043 0.7 0.643223
Target:  5'- cGGAUGcGC-AGCGGCAcgcuugGGCGGAcGCCg -3'
miRNA:   3'- -CCUAC-CGcUUGCUGUa-----CCGCUUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.