Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28108 | 5' | -51.6 | NC_005887.1 | + | 280 | 0.68 | 0.732673 |
Target: 5'- -cGUGGCgcggGAACuGCGUGGCGugaucagcGAGGCCg -3' miRNA: 3'- ccUACCG----CUUGcUGUACCGC--------UUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 1555 | 0.7 | 0.643223 |
Target: 5'- aGGAcUGGCu--CGACAUguucGGCGAccuGGGCCg -3' miRNA: 3'- -CCU-ACCGcuuGCUGUA----CCGCU---UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 2339 | 0.7 | 0.620519 |
Target: 5'- -uAUGGCGAucCGGCG-GGCGAccagcgcucgcAGGCCg -3' miRNA: 3'- ccUACCGCUu-GCUGUaCCGCU-----------UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 3046 | 0.68 | 0.77522 |
Target: 5'- cGGccaAUGaCGAACGACGacGCGAAGAUCc -3' miRNA: 3'- -CC---UACcGCUUGCUGUacCGCUUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 3779 | 0.72 | 0.518906 |
Target: 5'- cGGAUcgcggucGGCGcgcggcucGACGGCGUGGUaGAAGAUCg -3' miRNA: 3'- -CCUA-------CCGC--------UUGCUGUACCG-CUUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 3913 | 1.16 | 0.000665 |
Target: 5'- cGGAUGGCGAACGACAUGGCGAAGACCa -3' miRNA: 3'- -CCUACCGCUUGCUGUACCGCUUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 4036 | 0.82 | 0.141084 |
Target: 5'- gGGGUGGCcuGAACGACAagGGCGAGGAa- -3' miRNA: 3'- -CCUACCG--CUUGCUGUa-CCGCUUCUgg -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 5318 | 0.67 | 0.824776 |
Target: 5'- aGGU-GCGAGCGACAUGuCGguGAUCu -3' miRNA: 3'- cCUAcCGCUUGCUGUACcGCuuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 5412 | 0.67 | 0.794596 |
Target: 5'- cGGcgGGCGGcgccgcaGCGACc-GGCGc-GACCa -3' miRNA: 3'- -CCuaCCGCU-------UGCUGuaCCGCuuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 5619 | 0.79 | 0.208859 |
Target: 5'- aGGAU-GCGGGCGACGcGGUGAAGGCg -3' miRNA: 3'- -CCUAcCGCUUGCUGUaCCGCUUCUGg -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 5659 | 0.67 | 0.795599 |
Target: 5'- ----aGCGAagcauGCGGCAccGGCGAAGGCUg -3' miRNA: 3'- ccuacCGCU-----UGCUGUa-CCGCUUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 7364 | 0.73 | 0.498434 |
Target: 5'- cGGAcGGCGAcACGACGacccacagcgGGCGGccgGGGCCg -3' miRNA: 3'- -CCUaCCGCU-UGCUGUa---------CCGCU---UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 8390 | 0.66 | 0.852016 |
Target: 5'- ---aGcGCGAcgaaGCGACAaGGCGcguGGGCCg -3' miRNA: 3'- ccuaC-CGCU----UGCUGUaCCGCu--UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 8503 | 0.66 | 0.860619 |
Target: 5'- cGAgucGCGuAACGGCGUGGCGuucccGGGCg -3' miRNA: 3'- cCUac-CGC-UUGCUGUACCGCu----UCUGg -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 9277 | 0.66 | 0.843169 |
Target: 5'- ---cGGCGGuCGGCAcGGCGAc-GCCg -3' miRNA: 3'- ccuaCCGCUuGCUGUaCCGCUucUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 9478 | 0.71 | 0.609178 |
Target: 5'- cGGUGGCGAcgaACGACccGGCc--GACCc -3' miRNA: 3'- cCUACCGCU---UGCUGuaCCGcuuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 12642 | 0.66 | 0.860619 |
Target: 5'- cGGGUcGGCGGACaccaugcGCAUGcCGgcGGCCg -3' miRNA: 3'- -CCUA-CCGCUUGc------UGUACcGCuuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 14706 | 0.68 | 0.743502 |
Target: 5'- cGGcgGGCGGGCcgGGCGcGGCGAucgcgcAGGCg -3' miRNA: 3'- -CCuaCCGCUUG--CUGUaCCGCU------UCUGg -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 15158 | 0.82 | 0.133229 |
Target: 5'- ---aGGCGcucGACGGCAUGGCGAAGuACCu -3' miRNA: 3'- ccuaCCGC---UUGCUGUACCGCUUC-UGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 15276 | 0.66 | 0.843169 |
Target: 5'- ---cGGCGAGCGuCcgccGGCGAacgAGACUg -3' miRNA: 3'- ccuaCCGCUUGCuGua--CCGCU---UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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