miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2811 3' -62.4 NC_001491.2 + 106157 0.66 0.672698
Target:  5'- gGUCGGCCagaCACGCCagugaaCGCG-GCCaUGGGa -3'
miRNA:   3'- -CGGUCGG---GUGUGG------GCGCaCGGcACCC- -5'
2811 3' -62.4 NC_001491.2 + 56672 0.66 0.67173
Target:  5'- aCCAGUCCAgACagucuagCCGCGUacgcGCCGaGGGc -3'
miRNA:   3'- cGGUCGGGUgUG-------GGCGCA----CGGCaCCC- -5'
2811 3' -62.4 NC_001491.2 + 23377 0.66 0.663011
Target:  5'- -aCGGCCCACGCUgucugcauggUGCuUGCCGccuuUGGGu -3'
miRNA:   3'- cgGUCGGGUGUGG----------GCGcACGGC----ACCC- -5'
2811 3' -62.4 NC_001491.2 + 42559 0.66 0.663011
Target:  5'- aGCCAGC--ACugCCGCGUauaucucgGCCGcagccUGGGc -3'
miRNA:   3'- -CGGUCGggUGugGGCGCA--------CGGC-----ACCC- -5'
2811 3' -62.4 NC_001491.2 + 118510 0.66 0.663011
Target:  5'- cCCAGCCCgccGCGCCCGaCcUGCUGUacGGc -3'
miRNA:   3'- cGGUCGGG---UGUGGGC-GcACGGCA--CCc -5'
2811 3' -62.4 NC_001491.2 + 117793 0.66 0.653302
Target:  5'- uCCAGCUUcgGCGCCCGCucccaGCCGcccGGGa -3'
miRNA:   3'- cGGUCGGG--UGUGGGCGca---CGGCa--CCC- -5'
2811 3' -62.4 NC_001491.2 + 147774 0.66 0.643577
Target:  5'- cGCCAGCUCcccgaagcGCGCgCCGUcccggGCCGgGGGg -3'
miRNA:   3'- -CGGUCGGG--------UGUG-GGCGca---CGGCaCCC- -5'
2811 3' -62.4 NC_001491.2 + 114970 0.66 0.643577
Target:  5'- gGCC-GCCCugACuCCGCGggucgccugcGCCGUGc- -3'
miRNA:   3'- -CGGuCGGGugUG-GGCGCa---------CGGCACcc -5'
2811 3' -62.4 NC_001491.2 + 116732 0.66 0.614382
Target:  5'- gGCCcucgGGCCCcgacgcaagGCugCCGCGgccgcgGCCGcuccgGGGa -3'
miRNA:   3'- -CGG----UCGGG---------UGugGGCGCa-----CGGCa----CCC- -5'
2811 3' -62.4 NC_001491.2 + 63826 0.66 0.614382
Target:  5'- uCCAGCUCA-GCCCGCGUGUacaccuccaGGGg -3'
miRNA:   3'- cGGUCGGGUgUGGGCGCACGgca------CCC- -5'
2811 3' -62.4 NC_001491.2 + 34483 0.67 0.604666
Target:  5'- gGCCAcgcgcGCCCugGCCCGgGacgaacGUCGUcGGGu -3'
miRNA:   3'- -CGGU-----CGGGugUGGGCgCa-----CGGCA-CCC- -5'
2811 3' -62.4 NC_001491.2 + 116828 0.67 0.604666
Target:  5'- cCCGGCCCAgGCcgCCGC-UGCCGcGGc -3'
miRNA:   3'- cGGUCGGGUgUG--GGCGcACGGCaCCc -5'
2811 3' -62.4 NC_001491.2 + 124470 0.67 0.585295
Target:  5'- gGCCAGgcagcCCCGCAgCCGCGcGCaCGUGu- -3'
miRNA:   3'- -CGGUC-----GGGUGUgGGCGCaCG-GCACcc -5'
2811 3' -62.4 NC_001491.2 + 125137 0.67 0.575652
Target:  5'- cGCCccaccucgucuuGGCCCccaccuucgccGCAgCCGCG-GCCGgGGGg -3'
miRNA:   3'- -CGG------------UCGGG-----------UGUgGGCGCaCGGCaCCC- -5'
2811 3' -62.4 NC_001491.2 + 141586 0.67 0.566047
Target:  5'- cGCgGGCCCuGCGCCCGUaccugGCCcggGGGc -3'
miRNA:   3'- -CGgUCGGG-UGUGGGCGca---CGGca-CCC- -5'
2811 3' -62.4 NC_001491.2 + 81346 0.68 0.546965
Target:  5'- aCCGGCgugacgauaaauUCACACaCgGCGgccugGCCGUGGGc -3'
miRNA:   3'- cGGUCG------------GGUGUG-GgCGCa----CGGCACCC- -5'
2811 3' -62.4 NC_001491.2 + 1547 0.68 0.546016
Target:  5'- cGCaCAGCCCagcgaugcgcgGCGCCCccauuggGCG-GCgGUGGGc -3'
miRNA:   3'- -CG-GUCGGG-----------UGUGGG-------CGCaCGgCACCC- -5'
2811 3' -62.4 NC_001491.2 + 120711 0.69 0.491123
Target:  5'- cCCGGCCCAUACCuCGacgagaguaUGUGCCG-GGu -3'
miRNA:   3'- cGGUCGGGUGUGG-GC---------GCACGGCaCCc -5'
2811 3' -62.4 NC_001491.2 + 125607 0.69 0.491123
Target:  5'- cGCCccggGGCggCCGCugCCGCGgcggcgGCCGUcggaGGGg -3'
miRNA:   3'- -CGG----UCG--GGUGugGGCGCa-----CGGCA----CCC- -5'
2811 3' -62.4 NC_001491.2 + 100350 0.69 0.482066
Target:  5'- cGCUAGCCCACAgC-GCGa-CCGUGGa -3'
miRNA:   3'- -CGGUCGGGUGUgGgCGCacGGCACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.