Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 24589 | 0.68 | 0.501991 |
Target: 5'- gGCCGcGCGUGAugcuuaccgUCGAGGAaCU-GGCGAa -3' miRNA: 3'- -CGGC-CGCGCU---------AGUUCCUaGAgUCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 8517 | 0.68 | 0.501991 |
Target: 5'- cGCCGGgCGCucGAUCGcguugacgcGGAUCgcUCGGCGAu -3' miRNA: 3'- -CGGCC-GCG--CUAGUu--------CCUAG--AGUCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 39953 | 0.68 | 0.491507 |
Target: 5'- uGCUGGUccaccauucacGUGAUgcgCGAGGcgCUCAGCGGu -3' miRNA: 3'- -CGGCCG-----------CGCUA---GUUCCuaGAGUCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 28418 | 0.68 | 0.491507 |
Target: 5'- aGCCGaGCGCGcgC-AGGcgCUCGugcucGCGAa -3' miRNA: 3'- -CGGC-CGCGCuaGuUCCuaGAGU-----CGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 41018 | 0.68 | 0.481126 |
Target: 5'- cGCCGaaGCGGUCGAGcauGcgCUCGGCGu -3' miRNA: 3'- -CGGCcgCGCUAGUUC---CuaGAGUCGCu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 32438 | 0.68 | 0.481126 |
Target: 5'- gGCCGGCgGCGAUCAGGuugCgCAGCc- -3' miRNA: 3'- -CGGCCG-CGCUAGUUCcuaGaGUCGcu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 12800 | 0.68 | 0.480094 |
Target: 5'- aGCgCGGCGCGAUCGAGcGcauUCUgcugcugcgcgacCAGCGu -3' miRNA: 3'- -CG-GCCGCGCUAGUUC-Cu--AGA-------------GUCGCu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 11731 | 0.69 | 0.474949 |
Target: 5'- cGCaCGGCGCGcacgaaugcacgcaaCAgcaugaucaccgguGGGAUCUCGGCGGc -3' miRNA: 3'- -CG-GCCGCGCua-------------GU--------------UCCUAGAGUCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 16532 | 0.69 | 0.460692 |
Target: 5'- cGCCGGCGcCGAgu-GGGcgCgUCAGCa- -3' miRNA: 3'- -CGGCCGC-GCUaguUCCuaG-AGUCGcu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 25067 | 0.69 | 0.450648 |
Target: 5'- cGCCGGCGCGAgcu--GAcgCUCGGCa- -3' miRNA: 3'- -CGGCCGCGCUaguucCUa-GAGUCGcu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 14617 | 0.69 | 0.440726 |
Target: 5'- cGUCGGCGCcGUCGAGGGcgcgCUCAcggcagccggcGCGGu -3' miRNA: 3'- -CGGCCGCGcUAGUUCCUa---GAGU-----------CGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 17161 | 0.69 | 0.421261 |
Target: 5'- cCCGGCGUcGUCGAGGuauugcgagcgGUCgagCAGCGGc -3' miRNA: 3'- cGGCCGCGcUAGUUCC-----------UAGa--GUCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 13679 | 0.69 | 0.420302 |
Target: 5'- -gCGGCGCGA-CGgguGGGAUCUCgaccacgGGCGGc -3' miRNA: 3'- cgGCCGCGCUaGU---UCCUAGAG-------UCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 13326 | 0.7 | 0.411725 |
Target: 5'- cGCCGGC-CGcAUCGcGGAUCUCGccGCGc -3' miRNA: 3'- -CGGCCGcGC-UAGUuCCUAGAGU--CGCu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 11406 | 0.7 | 0.402324 |
Target: 5'- gGCCGGCGCcgcCAAGGcaucGUCUgAGCGc -3' miRNA: 3'- -CGGCCGCGcuaGUUCC----UAGAgUCGCu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 26348 | 0.7 | 0.383936 |
Target: 5'- gGCCGgguGCGCGAacaUCAccGGGAUCUugcCAGCGu -3' miRNA: 3'- -CGGC---CGCGCU---AGU--UCCUAGA---GUCGCu -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 13395 | 0.71 | 0.366114 |
Target: 5'- gGCCGGCGCGGc---GGAcgUCGGCGGc -3' miRNA: 3'- -CGGCCGCGCUaguuCCUagAGUCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 28749 | 0.71 | 0.357419 |
Target: 5'- cGCgGGCGUGAUCGcGGGUUgucgUCuGGCGAa -3' miRNA: 3'- -CGgCCGCGCUAGUuCCUAG----AG-UCGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 33384 | 0.71 | 0.340469 |
Target: 5'- cGCCGGCGCGG-C-AGGAUgaggCUCAucGCGGu -3' miRNA: 3'- -CGGCCGCGCUaGuUCCUA----GAGU--CGCU- -5' |
|||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 37476 | 0.72 | 0.293163 |
Target: 5'- cGCCGGaUGCGAUCAGGG----CGGCGGu -3' miRNA: 3'- -CGGCC-GCGCUAGUUCCuagaGUCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home