miRNA display CGI

Results 41 - 47 of 47 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28110	5'	-55.6	NC_005887.1	+	15842	0.73	0.271503
	Target:  5'- uGCgCGGCGCGAUCGAGGGaaacgcccgCgcgCAGCa- -3' miRNA:   3'- -CG-GCCGCGCUAGUUCCUa--------Ga--GUCGcu -5'
28110	5'	-55.6	NC_005887.1	+	29397	0.73	0.25779
	Target:  5'- uGCCGGCGCGGUCGcgaucAGGcUCgaCAGCu- -3' miRNA:   3'- -CGGCCGCGCUAGU-----UCCuAGa-GUCGcu -5'
28110	5'	-55.6	NC_005887.1	+	40781	0.75	0.208541
	Target:  5'- cGCCGaGCcgGCGGUCGAGGuUCguggCGGCGAc -3' miRNA:   3'- -CGGC-CG--CGCUAGUUCCuAGa---GUCGCU- -5'
28110	5'	-55.6	NC_005887.1	+	41617	0.76	0.177128
	Target:  5'- gGCCGGCGCGGcccgUGAGGAUCUgCuGCGu -3' miRNA:   3'- -CGGCCGCGCUa---GUUCCUAGA-GuCGCu -5'
28110	5'	-55.6	NC_005887.1	+	16730	0.8	0.084775
	Target:  5'- gGCCGGCGCGAUCAAgucGGAUUaCAuGCGGc -3' miRNA:   3'- -CGGCCGCGCUAGUU---CCUAGaGU-CGCU- -5'
28110	5'	-55.6	NC_005887.1	+	3348	0.81	0.075463
	Target:  5'- cGCCGGCGUGAUCAuGGAauccaUCgCGGCGAc -3' miRNA:   3'- -CGGCCGCGCUAGUuCCU-----AGaGUCGCU- -5'
28110	5'	-55.6	NC_005887.1	+	4640	1.11	0.00051
	Target:  5'- cGCCGGCGCGAUCAAGGAUCUCAGCGAc -3' miRNA:   3'- -CGGCCGCGCUAGUUCCUAGAGUCGCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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