miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 3' -54.7 NC_005887.1 + 5033 1.06 0.001079
Target:  5'- gACCGAAGCCAACGAAGGCACGGCAAUg -3'
miRNA:   3'- -UGGCUUCGGUUGCUUCCGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 5758 0.82 0.065212
Target:  5'- gGCCGAGGCC-GCGAAGGCGCuGGCc-- -3'
miRNA:   3'- -UGGCUUCGGuUGCUUCCGUG-CCGuua -5'
28112 3' -54.7 NC_005887.1 + 4406 0.8 0.082843
Target:  5'- -gCGc-GCCGGCGAAGGCGCGGCGAUc -3'
miRNA:   3'- ugGCuuCGGUUGCUUCCGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 3472 0.76 0.17148
Target:  5'- aGCCGcccuGCCAGCGGuAGcGCGCGGCGAa -3'
miRNA:   3'- -UGGCuu--CGGUUGCU-UC-CGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 41575 0.75 0.197279
Target:  5'- cGCCGAgacguuccugucGGCCAGCGGcggcccAGGUGCGGCGGc -3'
miRNA:   3'- -UGGCU------------UCGGUUGCU------UCCGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 3090 0.75 0.20283
Target:  5'- cGCCGAccacGGCCGcAUGAAGGaaaaGCGGCAGUc -3'
miRNA:   3'- -UGGCU----UCGGU-UGCUUCCg---UGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 627 0.74 0.214338
Target:  5'- gAUCGAAGCC-GCGAugaaAGcGCGCGGCGAg -3'
miRNA:   3'- -UGGCUUCGGuUGCU----UC-CGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 32339 0.74 0.232647
Target:  5'- cGCCGAuGCCGGCGAAGaaAUGGCAc- -3'
miRNA:   3'- -UGGCUuCGGUUGCUUCcgUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 19500 0.73 0.252255
Target:  5'- cCCGAuGCCGGCGAGcaucGGCGCaGGCGAc -3'
miRNA:   3'- uGGCUuCGGUUGCUU----CCGUG-CCGUUa -5'
28112 3' -54.7 NC_005887.1 + 36331 0.73 0.252255
Target:  5'- -gCGAGuacGCgGACGAAGGCACGGCc-- -3'
miRNA:   3'- ugGCUU---CGgUUGCUUCCGUGCCGuua -5'
28112 3' -54.7 NC_005887.1 + 30415 0.73 0.261861
Target:  5'- cGCCGAguucgcccaccaucaGGCCGACGucgGGGCGgGGCAu- -3'
miRNA:   3'- -UGGCU---------------UCGGUUGCu--UCCGUgCCGUua -5'
28112 3' -54.7 NC_005887.1 + 40781 0.73 0.273202
Target:  5'- cGCCG-AGCCGGCGGucgAGGUucgugGCGGCGAc -3'
miRNA:   3'- -UGGCuUCGGUUGCU---UCCG-----UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 14702 0.72 0.311177
Target:  5'- gUCGcGGCgGGCGGgccGGGCGCGGCGAUc -3'
miRNA:   3'- uGGCuUCGgUUGCU---UCCGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 15771 0.71 0.327453
Target:  5'- gGCCGcGGCC-GCGAAGGCGCagaaGCAGa -3'
miRNA:   3'- -UGGCuUCGGuUGCUUCCGUGc---CGUUa -5'
28112 3' -54.7 NC_005887.1 + 31907 0.7 0.38928
Target:  5'- gUCGAAGCCGuauuCGGaacgGGGCGgCGGCAAg -3'
miRNA:   3'- uGGCUUCGGUu---GCU----UCCGU-GCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 28039 0.7 0.38928
Target:  5'- gGCCcGAGCCGGCGgcGGCAaGaGCGAUa -3'
miRNA:   3'- -UGGcUUCGGUUGCuuCCGUgC-CGUUA- -5'
28112 3' -54.7 NC_005887.1 + 20008 0.7 0.418019
Target:  5'- cUCGAAGCgCcACGGAGGCugacaccggGCGGCAGc -3'
miRNA:   3'- uGGCUUCG-GuUGCUUCCG---------UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 15591 0.69 0.427882
Target:  5'- cGCCGAAGCUgaGACGcAGcGCACGGgCGu- -3'
miRNA:   3'- -UGGCUUCGG--UUGCuUC-CGUGCC-GUua -5'
28112 3' -54.7 NC_005887.1 + 25494 0.69 0.427882
Target:  5'- aGCgGcGGCUcgGACGAuGGCGCGGCGGg -3'
miRNA:   3'- -UGgCuUCGG--UUGCUuCCGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 2464 0.69 0.437881
Target:  5'- cUCGAAGCCAGCGGcacgcAGGauccggaACGGCGu- -3'
miRNA:   3'- uGGCUUCGGUUGCU-----UCCg------UGCCGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.