miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 3' -54.7 NC_005887.1 + 26332 0.68 0.48978
Target:  5'- gGCCGuGGCCGGCGcuGGC-CGGguGc -3'
miRNA:   3'- -UGGCuUCGGUUGCuuCCGuGCCguUa -5'
28112 3' -54.7 NC_005887.1 + 15591 0.69 0.427882
Target:  5'- cGCCGAAGCUgaGACGcAGcGCACGGgCGu- -3'
miRNA:   3'- -UGGCUUCGG--UUGCuUC-CGUGCC-GUua -5'
28112 3' -54.7 NC_005887.1 + 25494 0.69 0.427882
Target:  5'- aGCgGcGGCUcgGACGAuGGCGCGGCGGg -3'
miRNA:   3'- -UGgCuUCGG--UUGCUuCCGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 14320 0.69 0.448013
Target:  5'- gGCCGAcGCCGACaagcAGGUgaacGCGGCGAUc -3'
miRNA:   3'- -UGGCUuCGGUUGcu--UCCG----UGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 18945 0.69 0.455182
Target:  5'- gGCCGucggcGGCCAauacgcacgauucuGCGAAGGgcaCGCGGCAGc -3'
miRNA:   3'- -UGGCu----UCGGU--------------UGCUUCC---GUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 14614 0.69 0.468658
Target:  5'- gGCCGucggcGCCGuCGAGGGCgcgcucACGGCAGc -3'
miRNA:   3'- -UGGCuu---CGGUuGCUUCCG------UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 12874 0.68 0.479162
Target:  5'- gACCGuggcagguGCCGugcGCGAGcugaucGGCACGGCGAg -3'
miRNA:   3'- -UGGCuu------CGGU---UGCUU------CCGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 37089 0.68 0.479162
Target:  5'- cACCGAAGCgGGCGAGcacaGCcuCGGCGAUc -3'
miRNA:   3'- -UGGCUUCGgUUGCUUc---CGu-GCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 40469 0.68 0.479162
Target:  5'- uGCCGgcGUCGACGAgcucgauuacgAGGCGUGGCGc- -3'
miRNA:   3'- -UGGCuuCGGUUGCU-----------UCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 15771 0.71 0.327453
Target:  5'- gGCCGcGGCC-GCGAAGGCGCagaaGCAGa -3'
miRNA:   3'- -UGGCuUCGGuUGCUUCCGUGc---CGUUa -5'
28112 3' -54.7 NC_005887.1 + 14702 0.72 0.311177
Target:  5'- gUCGcGGCgGGCGGgccGGGCGCGGCGAUc -3'
miRNA:   3'- uGGCuUCGgUUGCU---UCCGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 40781 0.73 0.273202
Target:  5'- cGCCG-AGCCGGCGGucgAGGUucgugGCGGCGAc -3'
miRNA:   3'- -UGGCuUCGGUUGCU---UCCG-----UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 5758 0.82 0.065212
Target:  5'- gGCCGAGGCC-GCGAAGGCGCuGGCc-- -3'
miRNA:   3'- -UGGCUUCGGuUGCUUCCGUG-CCGuua -5'
28112 3' -54.7 NC_005887.1 + 4406 0.8 0.082843
Target:  5'- -gCGc-GCCGGCGAAGGCGCGGCGAUc -3'
miRNA:   3'- ugGCuuCGGUUGCUUCCGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 41575 0.75 0.197279
Target:  5'- cGCCGAgacguuccugucGGCCAGCGGcggcccAGGUGCGGCGGc -3'
miRNA:   3'- -UGGCU------------UCGGUUGCU------UCCGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 3090 0.75 0.20283
Target:  5'- cGCCGAccacGGCCGcAUGAAGGaaaaGCGGCAGUc -3'
miRNA:   3'- -UGGCU----UCGGU-UGCUUCCg---UGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 627 0.74 0.214338
Target:  5'- gAUCGAAGCC-GCGAugaaAGcGCGCGGCGAg -3'
miRNA:   3'- -UGGCUUCGGuUGCU----UC-CGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 32339 0.74 0.232647
Target:  5'- cGCCGAuGCCGGCGAAGaaAUGGCAc- -3'
miRNA:   3'- -UGGCUuCGGUUGCUUCcgUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 19500 0.73 0.252255
Target:  5'- cCCGAuGCCGGCGAGcaucGGCGCaGGCGAc -3'
miRNA:   3'- uGGCUuCGGUUGCUU----CCGUG-CCGUUa -5'
28112 3' -54.7 NC_005887.1 + 30415 0.73 0.261861
Target:  5'- cGCCGAguucgcccaccaucaGGCCGACGucgGGGCGgGGCAu- -3'
miRNA:   3'- -UGGCU---------------UCGGUUGCu--UCCGUgCCGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.