miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 3' -54.7 NC_005887.1 + 26982 0.67 0.578068
Target:  5'- gUCGAcggcGGCCAGCGAcucGGGCGCaGCu-- -3'
miRNA:   3'- uGGCU----UCGGUUGCU---UCCGUGcCGuua -5'
28112 3' -54.7 NC_005887.1 + 24972 0.67 0.566775
Target:  5'- uGCCGAuccGGCUgcuGCGAAGaagaccgagcGCGCGGCAu- -3'
miRNA:   3'- -UGGCU---UCGGu--UGCUUC----------CGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 37127 0.67 0.566775
Target:  5'- -aCGccGUCAGCGAgaAGGC-CGGCAAg -3'
miRNA:   3'- ugGCuuCGGUUGCU--UCCGuGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 35395 0.67 0.566775
Target:  5'- gGCCG--GCCGcCGcGGcGCGCGGCAGUg -3'
miRNA:   3'- -UGGCuuCGGUuGCuUC-CGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 13388 0.67 0.566775
Target:  5'- cGCUGAAgGCCGGCGc-GGCggacgucgGCGGCAAg -3'
miRNA:   3'- -UGGCUU-CGGUUGCuuCCG--------UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 10453 0.67 0.55554
Target:  5'- cCCGAGGCCGGCGAuagucgacgucGGCACGcCGu- -3'
miRNA:   3'- uGGCUUCGGUUGCUu----------CCGUGCcGUua -5'
28112 3' -54.7 NC_005887.1 + 16232 0.67 0.55554
Target:  5'- gAUCGAuacgccGGCCGGCGAGcGCACgGGCAc- -3'
miRNA:   3'- -UGGCU------UCGGUUGCUUcCGUG-CCGUua -5'
28112 3' -54.7 NC_005887.1 + 954 0.67 0.55554
Target:  5'- aGCCGAGGCCGccugacucgucCGgcGGCGCGGg--- -3'
miRNA:   3'- -UGGCUUCGGUu----------GCuuCCGUGCCguua -5'
28112 3' -54.7 NC_005887.1 + 1476 0.67 0.541033
Target:  5'- cCCGAcGCCGACGGcgugcggcgcucgcGcGGCGCGGCcGUg -3'
miRNA:   3'- uGGCUuCGGUUGCU--------------U-CCGUGCCGuUA- -5'
28112 3' -54.7 NC_005887.1 + 24846 0.67 0.541033
Target:  5'- uGCgGAAGUCGGCGAucAGGUcauucaccguccagGCGGCGGc -3'
miRNA:   3'- -UGgCUUCGGUUGCU--UCCG--------------UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 11117 0.68 0.511335
Target:  5'- cGCgCGAAGCUGGCcGAGGCGCcguGGCGGc -3'
miRNA:   3'- -UG-GCUUCGGUUGcUUCCGUG---CCGUUa -5'
28112 3' -54.7 NC_005887.1 + 25085 0.68 0.511335
Target:  5'- uACCGGcuGGCCGGCGGccGC-CGGCGc- -3'
miRNA:   3'- -UGGCU--UCGGUUGCUucCGuGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 18039 0.68 0.500506
Target:  5'- cGCCGGacugacGGCCGACGAuuGGGCGaucgugaacaaGGCGAc -3'
miRNA:   3'- -UGGCU------UCGGUUGCU--UCCGUg----------CCGUUa -5'
28112 3' -54.7 NC_005887.1 + 26332 0.68 0.48978
Target:  5'- gGCCGuGGCCGGCGcuGGC-CGGguGc -3'
miRNA:   3'- -UGGCuUCGGUUGCuuCCGuGCCguUa -5'
28112 3' -54.7 NC_005887.1 + 37089 0.68 0.479162
Target:  5'- cACCGAAGCgGGCGAGcacaGCcuCGGCGAUc -3'
miRNA:   3'- -UGGCUUCGgUUGCUUc---CGu-GCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 40469 0.68 0.479162
Target:  5'- uGCCGgcGUCGACGAgcucgauuacgAGGCGUGGCGc- -3'
miRNA:   3'- -UGGCuuCGGUUGCU-----------UCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 12874 0.68 0.479162
Target:  5'- gACCGuggcagguGCCGugcGCGAGcugaucGGCACGGCGAg -3'
miRNA:   3'- -UGGCuu------CGGU---UGCUU------CCGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 14614 0.69 0.468658
Target:  5'- gGCCGucggcGCCGuCGAGGGCgcgcucACGGCAGc -3'
miRNA:   3'- -UGGCuu---CGGUuGCUUCCG------UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 18945 0.69 0.455182
Target:  5'- gGCCGucggcGGCCAauacgcacgauucuGCGAAGGgcaCGCGGCAGc -3'
miRNA:   3'- -UGGCu----UCGGU--------------UGCUUCC---GUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 14320 0.69 0.448013
Target:  5'- gGCCGAcGCCGACaagcAGGUgaacGCGGCGAUc -3'
miRNA:   3'- -UGGCUuCGGUUGcu--UCCG----UGCCGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.