miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28114 3' -53.2 NC_005887.1 + 5248 1.11 0.000869
Target:  5'- uGCAGAUCACCGACAUGUCGCUCGCACc -3'
miRNA:   3'- -CGUCUAGUGGCUGUACAGCGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 12094 0.81 0.115713
Target:  5'- uCAGGUCACCGACGUGcUgGC-CGCGCa -3'
miRNA:   3'- cGUCUAGUGGCUGUAC-AgCGaGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 14083 0.76 0.246957
Target:  5'- gGCGGcgCGCCGGCG-GUUGCggaggCGCGCg -3'
miRNA:   3'- -CGUCuaGUGGCUGUaCAGCGa----GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 39254 0.75 0.260474
Target:  5'- aGCAGuUgGCCGACGUGuUCGggauCUCGCGCg -3'
miRNA:   3'- -CGUCuAgUGGCUGUAC-AGC----GAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 32658 0.75 0.281871
Target:  5'- uGCAGcUCACCGG--UGUCGCgcgugCGCGCu -3'
miRNA:   3'- -CGUCuAGUGGCUguACAGCGa----GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 17811 0.74 0.289307
Target:  5'- gGCuGAUCGCCGA---GUCGCUCgaGCACg -3'
miRNA:   3'- -CGuCUAGUGGCUguaCAGCGAG--CGUG- -5'
28114 3' -53.2 NC_005887.1 + 1468 0.74 0.320588
Target:  5'- aGCAGGagcccgaCGCCGACggcGUGcggCGCUCGCGCg -3'
miRNA:   3'- -CGUCUa------GUGGCUG---UACa--GCGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 9703 0.74 0.328793
Target:  5'- gGCAGA-CACCGACA--UCGCgagccaccggUCGCGCa -3'
miRNA:   3'- -CGUCUaGUGGCUGUacAGCG----------AGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 6836 0.74 0.328793
Target:  5'- cGCGGGUCugcaacAUCGACGUGUCGgacCUCGCGa -3'
miRNA:   3'- -CGUCUAG------UGGCUGUACAGC---GAGCGUg -5'
28114 3' -53.2 NC_005887.1 + 1625 0.73 0.337153
Target:  5'- cCAGGUCGCCGaACAUGUCGagccaguccUUCGCGg -3'
miRNA:   3'- cGUCUAGUGGC-UGUACAGC---------GAGCGUg -5'
28114 3' -53.2 NC_005887.1 + 16054 0.73 0.353459
Target:  5'- uGCAGAcCGCCGAUacgcuuccugcugGUGUUGCgcCGCACa -3'
miRNA:   3'- -CGUCUaGUGGCUG-------------UACAGCGa-GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 2484 0.72 0.381241
Target:  5'- cGCGGAUCAUCGACGgcgagcccgGcCuGCUCGUGCa -3'
miRNA:   3'- -CGUCUAGUGGCUGUa--------CaG-CGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 14543 0.72 0.399921
Target:  5'- gGCGGcgcGUCgAUCGGCAUGUCGCgCGCGg -3'
miRNA:   3'- -CGUC---UAG-UGGCUGUACAGCGaGCGUg -5'
28114 3' -53.2 NC_005887.1 + 15348 0.71 0.438983
Target:  5'- gGCAGucucguUCGCCGGCGga-CGCUCGcCGCg -3'
miRNA:   3'- -CGUCu-----AGUGGCUGUacaGCGAGC-GUG- -5'
28114 3' -53.2 NC_005887.1 + 4219 0.71 0.480134
Target:  5'- cGCAGGagAaaGGCGUGcUGCUCGCGCc -3'
miRNA:   3'- -CGUCUagUggCUGUACaGCGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 15626 0.71 0.480134
Target:  5'- aGCAGGcggccgggcUCGCCGAucagggcgcCGUGUCGCagaugCGCGCc -3'
miRNA:   3'- -CGUCU---------AGUGGCU---------GUACAGCGa----GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 15807 0.7 0.501405
Target:  5'- gGCAG-UCACUGACcacgaggcgcagGUGcagCGCUUGCGCg -3'
miRNA:   3'- -CGUCuAGUGGCUG------------UACa--GCGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 13715 0.7 0.501405
Target:  5'- aGCAGAUCaacggcaaGCCGaACAUcGUCGCgaugcCGUACg -3'
miRNA:   3'- -CGUCUAG--------UGGC-UGUA-CAGCGa----GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 4372 0.7 0.512195
Target:  5'- gGCAGcUgGCCGGCcucggcgaggAUGUCGacCUCGCGCg -3'
miRNA:   3'- -CGUCuAgUGGCUG----------UACAGC--GAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 17036 0.7 0.512195
Target:  5'- cGUAGucgagcUCGCCGACAuUGcCGCcCGCGCg -3'
miRNA:   3'- -CGUCu-----AGUGGCUGU-ACaGCGaGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.