Results 1 - 20 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 40529 | 0.68 | 0.612655 |
Target: 5'- cGCGGcgCGCggcagcgaCGACGgucUGgCGCUCGCGCa -3' miRNA: 3'- -CGUCuaGUG--------GCUGU---ACaGCGAGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 15807 | 0.7 | 0.501405 |
Target: 5'- gGCAG-UCACUGACcacgaggcgcagGUGcagCGCUUGCGCg -3' miRNA: 3'- -CGUCuAGUGGCUG------------UACa--GCGAGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 34880 | 0.7 | 0.52308 |
Target: 5'- --cGAUCGCCu---UGUCGUUCGCGCu -3' miRNA: 3'- cguCUAGUGGcuguACAGCGAGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 37327 | 0.7 | 0.52308 |
Target: 5'- cGCAGcagCGCCGGCAcuggcaucgGUCGC-CGCAUc -3' miRNA: 3'- -CGUCua-GUGGCUGUa--------CAGCGaGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 13037 | 0.69 | 0.556231 |
Target: 5'- aGCAGAUcCACaCGGCcagcGUCGCcgCGUACa -3' miRNA: 3'- -CGUCUA-GUG-GCUGua--CAGCGa-GCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 977 | 0.69 | 0.562938 |
Target: 5'- aGguGAUCGCCGACAcgcgcaauugccgGcCGCcgugCGCGCg -3' miRNA: 3'- -CguCUAGUGGCUGUa------------CaGCGa---GCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 9101 | 0.69 | 0.578668 |
Target: 5'- cGCGGG-CACCGGCGccguuacucugGUCGCaaGCGCa -3' miRNA: 3'- -CGUCUaGUGGCUGUa----------CAGCGagCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 31491 | 0.68 | 0.612655 |
Target: 5'- cGUAG-UCACCGAU-UGcCGCgCGCGCg -3' miRNA: 3'- -CGUCuAGUGGCUGuACaGCGaGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 39922 | 0.68 | 0.612655 |
Target: 5'- cGCAGAUCgaGCCgGGCGcGUCGacgaCGCGCa -3' miRNA: 3'- -CGUCUAG--UGG-CUGUaCAGCga--GCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 13715 | 0.7 | 0.501405 |
Target: 5'- aGCAGAUCaacggcaaGCCGaACAUcGUCGCgaugcCGUACg -3' miRNA: 3'- -CGUCUAG--------UGGC-UGUA-CAGCGa----GCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 4219 | 0.71 | 0.480134 |
Target: 5'- cGCAGGagAaaGGCGUGcUGCUCGCGCc -3' miRNA: 3'- -CGUCUagUggCUGUACaGCGAGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 15626 | 0.71 | 0.480134 |
Target: 5'- aGCAGGcggccgggcUCGCCGAucagggcgcCGUGUCGCagaugCGCGCc -3' miRNA: 3'- -CGUCU---------AGUGGCU---------GUACAGCGa----GCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 12094 | 0.81 | 0.115713 |
Target: 5'- uCAGGUCACCGACGUGcUgGC-CGCGCa -3' miRNA: 3'- cGUCUAGUGGCUGUAC-AgCGaGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 32658 | 0.75 | 0.281871 |
Target: 5'- uGCAGcUCACCGG--UGUCGCgcgugCGCGCu -3' miRNA: 3'- -CGUCuAGUGGCUguACAGCGa----GCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 17811 | 0.74 | 0.289307 |
Target: 5'- gGCuGAUCGCCGA---GUCGCUCgaGCACg -3' miRNA: 3'- -CGuCUAGUGGCUguaCAGCGAG--CGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 1468 | 0.74 | 0.320588 |
Target: 5'- aGCAGGagcccgaCGCCGACggcGUGcggCGCUCGCGCg -3' miRNA: 3'- -CGUCUa------GUGGCUG---UACa--GCGAGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 6836 | 0.74 | 0.328793 |
Target: 5'- cGCGGGUCugcaacAUCGACGUGUCGgacCUCGCGa -3' miRNA: 3'- -CGUCUAG------UGGCUGUACAGC---GAGCGUg -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 16054 | 0.73 | 0.353459 |
Target: 5'- uGCAGAcCGCCGAUacgcuuccugcugGUGUUGCgcCGCACa -3' miRNA: 3'- -CGUCUaGUGGCUG-------------UACAGCGa-GCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 2484 | 0.72 | 0.381241 |
Target: 5'- cGCGGAUCAUCGACGgcgagcccgGcCuGCUCGUGCa -3' miRNA: 3'- -CGUCUAGUGGCUGUa--------CaG-CGAGCGUG- -5' |
|||||||
28114 | 3' | -53.2 | NC_005887.1 | + | 14543 | 0.72 | 0.399921 |
Target: 5'- gGCGGcgcGUCgAUCGGCAUGUCGCgCGCGg -3' miRNA: 3'- -CGUC---UAG-UGGCUGUACAGCGaGCGUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home