Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28116 | 5' | -56.8 | NC_005887.1 | + | 42068 | 0.7 | 0.319226 |
Target: 5'- gCgACACuCGACGUGGgcCGCAGGCcGUGc -3' miRNA: 3'- gGgUGUG-GCUGCACC--GCGUUCGaCAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 40681 | 0.68 | 0.415269 |
Target: 5'- uCCUGCACCuGGCGcGcGCGCAcGGCUGg- -3' miRNA: 3'- -GGGUGUGG-CUGCaC-CGCGU-UCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 39523 | 0.66 | 0.516393 |
Target: 5'- gCCGCACCaAC-UGGCGCcGGCUcuGUAc -3' miRNA: 3'- gGGUGUGGcUGcACCGCGuUCGA--CAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 37482 | 0.68 | 0.419082 |
Target: 5'- cUCCGCACCuGGCGUGcaggcagucgcgaccGCGCAgcgccAGCUGa- -3' miRNA: 3'- -GGGUGUGG-CUGCAC---------------CGCGU-----UCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 36089 | 0.66 | 0.516393 |
Target: 5'- gCCgGCGCCGAgGUGaCGCu-GCUGg- -3' miRNA: 3'- -GGgUGUGGCUgCACcGCGuuCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 36034 | 0.7 | 0.335383 |
Target: 5'- aCCUcgGCGCCGGCGaGGCGCAAGg---- -3' miRNA: 3'- -GGG--UGUGGCUGCaCCGCGUUCgacau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 35894 | 0.71 | 0.296099 |
Target: 5'- aUCUACGCCGACGcGGCGCAcgaggaacacAGCg--- -3' miRNA: 3'- -GGGUGUGGCUGCaCCGCGU----------UCGacau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 32333 | 0.68 | 0.405831 |
Target: 5'- aCCaCACGCCGAUGccGGCgaagaaaugGCAcuGGCUGUAu -3' miRNA: 3'- -GG-GUGUGGCUGCa-CCG---------CGU--UCGACAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 30425 | 0.68 | 0.423878 |
Target: 5'- gCCCACcaucagGCCGACGUcGGgGCGgggcauguugccgGGCUGg- -3' miRNA: 3'- -GGGUG------UGGCUGCA-CCgCGU-------------UCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 29392 | 0.68 | 0.444373 |
Target: 5'- gCCCAUGCCGGCGcGGuCGCGaucaGGCUc-- -3' miRNA: 3'- -GGGUGUGGCUGCaCC-GCGU----UCGAcau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 27403 | 0.67 | 0.464399 |
Target: 5'- gCCGCugCG-CGUGGCGCAGuCgacGUGg -3' miRNA: 3'- gGGUGugGCuGCACCGCGUUcGa--CAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 27146 | 0.68 | 0.415269 |
Target: 5'- aUCACgcgGCCGaACGgccacgGGCGCGGGUUGUGc -3' miRNA: 3'- gGGUG---UGGC-UGCa-----CCGCGUUCGACAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 25740 | 0.73 | 0.22245 |
Target: 5'- aCCCACugACCGACGaUGGCGaCGcGCUGc- -3' miRNA: 3'- -GGGUG--UGGCUGC-ACCGC-GUuCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 25080 | 0.75 | 0.143547 |
Target: 5'- -gCugGCCGGCGgccgccGGCGCGAGCUGa- -3' miRNA: 3'- ggGugUGGCUGCa-----CCGCGUUCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 23517 | 0.69 | 0.369459 |
Target: 5'- gCCGCGCUGACGaacGCGCGggugAGCUGg- -3' miRNA: 3'- gGGUGUGGCUGCac-CGCGU----UCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 23367 | 0.68 | 0.40583 |
Target: 5'- gCCGCAgugCGGCGUuguucuucGGCGCGGGCUGc- -3' miRNA: 3'- gGGUGUg--GCUGCA--------CCGCGUUCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 23226 | 0.71 | 0.274296 |
Target: 5'- gCCACGCCGACGgcaCGCGAGCg--- -3' miRNA: 3'- gGGUGUGGCUGCaccGCGUUCGacau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 22842 | 0.66 | 0.559601 |
Target: 5'- gCCGCGCCGGCGUcGaGCcaacgaGCAcGUUGUAg -3' miRNA: 3'- gGGUGUGGCUGCA-C-CG------CGUuCGACAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 20970 | 0.72 | 0.230881 |
Target: 5'- uCCCGCGCUGGCGcuUGGCGcCAcgcucgcaccuauucAGCUGUu -3' miRNA: 3'- -GGGUGUGGCUGC--ACCGC-GU---------------UCGACAu -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 19499 | 0.69 | 0.360721 |
Target: 5'- uCCCgAUGCCGGCGagcaucGGCGCAGGCg--- -3' miRNA: 3'- -GGG-UGUGGCUGCa-----CCGCGUUCGacau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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