miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 523 0.67 0.419582
Target:  5'- gUCGaucugaacGCGUCGGCCGccGCGCGCcGcGCc -3'
miRNA:   3'- gAGCgc------UGCAGCCGGU--UGCGCGuC-CG- -5'
28118 3' -59.2 NC_005887.1 + 25494 0.67 0.419582
Target:  5'- --aGCGGCGgcUCGGaCgAugGCGC-GGCg -3'
miRNA:   3'- gagCGCUGC--AGCC-GgUugCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 7057 0.67 0.410343
Target:  5'- uUCGCGAucuUGUCGacgauGCCGAgGCGCAG-Cu -3'
miRNA:   3'- gAGCGCU---GCAGC-----CGGUUgCGCGUCcG- -5'
28118 3' -59.2 NC_005887.1 + 5090 0.67 0.410343
Target:  5'- uUCGuUGGCuUCGGUCuGCGCcucgGCGGGCg -3'
miRNA:   3'- gAGC-GCUGcAGCCGGuUGCG----CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 23361 0.67 0.410343
Target:  5'- -gUGCGGCGUUGuuCuuCgGCGCGGGCu -3'
miRNA:   3'- gaGCGCUGCAGCcgGuuG-CGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 41288 0.67 0.410343
Target:  5'- gCUUGuCGAgcUCGGUCAcgggcacgacgACGCGCGGGUc -3'
miRNA:   3'- -GAGC-GCUgcAGCCGGU-----------UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 3326 0.67 0.410343
Target:  5'- aUCGCGGCGaCGaaguuGCgCAGCGCGagcGGCg -3'
miRNA:   3'- gAGCGCUGCaGC-----CG-GUUGCGCgu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 15843 0.67 0.410343
Target:  5'- -gCGCGGCG-CGaucgagggaaacGCCcGCGCGCAgcaGGCg -3'
miRNA:   3'- gaGCGCUGCaGC------------CGGuUGCGCGU---CCG- -5'
28118 3' -59.2 NC_005887.1 + 14826 0.67 0.410343
Target:  5'- -cCGCGACGcugaUGGCgGGCacguuCGCGGGCg -3'
miRNA:   3'- gaGCGCUGCa---GCCGgUUGc----GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 40682 0.67 0.409426
Target:  5'- uCUUGcCGAUGUgCGGCCAcacACGCucgucgaggaaccGCGGGUu -3'
miRNA:   3'- -GAGC-GCUGCA-GCCGGU---UGCG-------------CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 26209 0.67 0.40123
Target:  5'- --gGCGGCGgUGGCCGGCcuGCaGCuGGCg -3'
miRNA:   3'- gagCGCUGCaGCCGGUUG--CG-CGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 16522 0.67 0.40123
Target:  5'- aUCGCGuCG-CcGCCGGCGCcgaGUGGGCg -3'
miRNA:   3'- gAGCGCuGCaGcCGGUUGCG---CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 23191 0.67 0.40123
Target:  5'- gCUCGCGAUcaCGGCCGGgG-GC-GGCu -3'
miRNA:   3'- -GAGCGCUGcaGCCGGUUgCgCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 15741 0.67 0.40123
Target:  5'- -gCGCGGCGgugagcuggUCGaGCuCGGCGCGCAucugcgacacGGCg -3'
miRNA:   3'- gaGCGCUGC---------AGC-CG-GUUGCGCGU----------CCG- -5'
28118 3' -59.2 NC_005887.1 + 33811 0.67 0.40123
Target:  5'- gCUCGUGAa---GGCCGGCGCGCuGa- -3'
miRNA:   3'- -GAGCGCUgcagCCGGUUGCGCGuCcg -5'
28118 3' -59.2 NC_005887.1 + 11397 0.67 0.40123
Target:  5'- --aGCGcUGgCGGCCGGCGCcGCcaAGGCa -3'
miRNA:   3'- gagCGCuGCaGCCGGUUGCG-CG--UCCG- -5'
28118 3' -59.2 NC_005887.1 + 4307 0.67 0.40123
Target:  5'- cCUCGcCGAgGcCGGCCAGCuGCcggacaugccGCAGGa -3'
miRNA:   3'- -GAGC-GCUgCaGCCGGUUG-CG----------CGUCCg -5'
28118 3' -59.2 NC_005887.1 + 18152 0.67 0.40123
Target:  5'- -cCGcCGACGUCGuGCCGAaGCuGCucGGCa -3'
miRNA:   3'- gaGC-GCUGCAGC-CGGUUgCG-CGu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 18586 0.67 0.40123
Target:  5'- gUCGCGGCGuuccagUCGGCCGAuuacgguucguUGCucgGCAGcGCg -3'
miRNA:   3'- gAGCGCUGC------AGCCGGUU-----------GCG---CGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 28585 0.67 0.392248
Target:  5'- -gCGCgGACG-CGGUCGACGagGUAGGUu -3'
miRNA:   3'- gaGCG-CUGCaGCCGGUUGCg-CGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.