miRNA display CGI


Results 21 - 40 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 16387 0.66 0.447074
Target:  5'- uUCGCGGCGaccucgaacaGGCCGGCGUccuGCguguucaAGGCg -3'
miRNA:   3'- gAGCGCUGCag--------CCGGUUGCG---CG-------UCCG- -5'
28118 3' -59.2 NC_005887.1 + 25108 0.66 0.446109
Target:  5'- uUCGCGACcgguuGUcCGGCCGagauccaGCGCcgcagcuGCAGGUc -3'
miRNA:   3'- gAGCGCUG-----CA-GCCGGU-------UGCG-------CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 29768 0.66 0.438434
Target:  5'- -aCGCGACGgcgagUGGCUGcGCGUGCAGcuGCc -3'
miRNA:   3'- gaGCGCUGCa----GCCGGU-UGCGCGUC--CG- -5'
28118 3' -59.2 NC_005887.1 + 36128 0.66 0.438434
Target:  5'- aUCGaCGGCGUgcGCgAGCGCGUcgAGGCc -3'
miRNA:   3'- gAGC-GCUGCAgcCGgUUGCGCG--UCCG- -5'
28118 3' -59.2 NC_005887.1 + 22839 0.66 0.438434
Target:  5'- -gCGcCGGCGUCGaGCCAACGaGCAcGUu -3'
miRNA:   3'- gaGC-GCUGCAGC-CGGUUGCgCGUcCG- -5'
28118 3' -59.2 NC_005887.1 + 4624 0.66 0.438434
Target:  5'- -cCGCGGCGccggUGGCCGccgGCGCGaucaAGGa -3'
miRNA:   3'- gaGCGCUGCa---GCCGGU---UGCGCg---UCCg -5'
28118 3' -59.2 NC_005887.1 + 3074 0.66 0.428947
Target:  5'- -cCGCGGCGcUGGCCGcagGCGCGUugacGGa -3'
miRNA:   3'- gaGCGCUGCaGCCGGU---UGCGCGu---CCg -5'
28118 3' -59.2 NC_005887.1 + 32820 0.66 0.428947
Target:  5'- -cUGCauGGCG-CGcGCCGGCGCGCAcGCg -3'
miRNA:   3'- gaGCG--CUGCaGC-CGGUUGCGCGUcCG- -5'
28118 3' -59.2 NC_005887.1 + 8175 0.66 0.428947
Target:  5'- --aGCGGCGccUCGGCgAGCGCgGCGaGCu -3'
miRNA:   3'- gagCGCUGC--AGCCGgUUGCG-CGUcCG- -5'
28118 3' -59.2 NC_005887.1 + 33931 0.66 0.428947
Target:  5'- --aGCGcUGUCGGCU-GC-CGCAGGCu -3'
miRNA:   3'- gagCGCuGCAGCCGGuUGcGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 17741 0.66 0.428947
Target:  5'- aUCGUgccGACGUC-GCCAA-GCGC-GGCg -3'
miRNA:   3'- gAGCG---CUGCAGcCGGUUgCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 3149 0.66 0.428947
Target:  5'- -aUGCGGCcgugGUCGGCguuCAGCGCcuGCAGGa -3'
miRNA:   3'- gaGCGCUG----CAGCCG---GUUGCG--CGUCCg -5'
28118 3' -59.2 NC_005887.1 + 33866 0.66 0.428947
Target:  5'- -cCGCGugGU-GGCCGugggucCGCGCuuGGUg -3'
miRNA:   3'- gaGCGCugCAgCCGGUu-----GCGCGu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 39896 0.66 0.428947
Target:  5'- -gUGCGACGgCGGCCcgucGCGCuuuauccaGCAGuGCg -3'
miRNA:   3'- gaGCGCUGCaGCCGGu---UGCG--------CGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 15900 0.66 0.428947
Target:  5'- gCUCGaCG-CGcagcUGGCCGAccugcguucCGCGCGGGCc -3'
miRNA:   3'- -GAGC-GCuGCa---GCCGGUU---------GCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 11469 0.66 0.428947
Target:  5'- gCUCGCGAacaaucaGgcagagcaGGUCuACGCGCAGGg -3'
miRNA:   3'- -GAGCGCUg------Cag------CCGGuUGCGCGUCCg -5'
28118 3' -59.2 NC_005887.1 + 27254 0.66 0.428947
Target:  5'- aUCGCG-CGcCGGCCcGCGuCGCcaaugaucGGCa -3'
miRNA:   3'- gAGCGCuGCaGCCGGuUGC-GCGu-------CCG- -5'
28118 3' -59.2 NC_005887.1 + 23966 0.67 0.419582
Target:  5'- -cCGaCGACcUCGGCCcacugcucgAGCGCG-AGGCg -3'
miRNA:   3'- gaGC-GCUGcAGCCGG---------UUGCGCgUCCG- -5'
28118 3' -59.2 NC_005887.1 + 13540 0.67 0.419582
Target:  5'- aUCGCGaauGCGaUCGGCgauGCGCugccgcccgaGCAGGCc -3'
miRNA:   3'- gAGCGC---UGC-AGCCGgu-UGCG----------CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 25494 0.67 0.419582
Target:  5'- --aGCGGCGgcUCGGaCgAugGCGC-GGCg -3'
miRNA:   3'- gagCGCUGC--AGCC-GgUugCGCGuCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.