miRNA display CGI


Results 21 - 40 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 3786 0.74 0.142088
Target:  5'- gCUUGCG-CGgaucgCGGUCGGCGCGC-GGCu -3'
miRNA:   3'- -GAGCGCuGCa----GCCGGUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 3555 0.74 0.142088
Target:  5'- cCUUGcCGACGUCGuGCucgaucauCAGCGCGcCAGGCc -3'
miRNA:   3'- -GAGC-GCUGCAGC-CG--------GUUGCGC-GUCCG- -5'
28118 3' -59.2 NC_005887.1 + 23637 0.74 0.14601
Target:  5'- gUCGCGuucgcacUGcCGGCCGGCGaUGCGGGCg -3'
miRNA:   3'- gAGCGCu------GCaGCCGGUUGC-GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 33735 0.73 0.150031
Target:  5'- aUCGCGGCGa-GGaUCAGCGCGCcGGCc -3'
miRNA:   3'- gAGCGCUGCagCC-GGUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 36376 0.73 0.150031
Target:  5'- -gCGCGGCGUCGaCCGcCGCGCAgaucGGCc -3'
miRNA:   3'- gaGCGCUGCAGCcGGUuGCGCGU----CCG- -5'
28118 3' -59.2 NC_005887.1 + 41719 0.73 0.165796
Target:  5'- --gGCGAUGaCGGgcggcgauccgaucCCGGCGCGCGGGCu -3'
miRNA:   3'- gagCGCUGCaGCC--------------GGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 41958 0.73 0.167138
Target:  5'- gCUCGCGugGUgCGuGCgCGGCGCGCucGCc -3'
miRNA:   3'- -GAGCGCugCA-GC-CG-GUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 40395 0.73 0.17168
Target:  5'- aUCGUGAUGcccggcaCGGCCGACGUGCcGGUc -3'
miRNA:   3'- gAGCGCUGCa------GCCGGUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 5491 0.72 0.176331
Target:  5'- -gCGCGugGUCGcGCCGGuCGCuGCGGcGCc -3'
miRNA:   3'- gaGCGCugCAGC-CGGUU-GCG-CGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 30920 0.72 0.176331
Target:  5'- -gCGCGGCaUCGccuuguGCCAGCGCGCucGGCg -3'
miRNA:   3'- gaGCGCUGcAGC------CGGUUGCGCGu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 40502 0.72 0.178223
Target:  5'- -gCGCGACGUCGuGUucggcauccaccacgCGGCGCGC-GGCa -3'
miRNA:   3'- gaGCGCUGCAGC-CG---------------GUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 35401 0.72 0.181095
Target:  5'- gCUCGUGGC--CGGCCGccgcgGCGCGC-GGCa -3'
miRNA:   3'- -GAGCGCUGcaGCCGGU-----UGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 24941 0.72 0.181095
Target:  5'- aUCGCGACG-CGu---GCGCGCGGGCc -3'
miRNA:   3'- gAGCGCUGCaGCcgguUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 27318 0.72 0.18548
Target:  5'- uCUCGCacuCGUcCGGCCAcgucgacugcgccACGCGCAgcGGCg -3'
miRNA:   3'- -GAGCGcu-GCA-GCCGGU-------------UGCGCGU--CCG- -5'
28118 3' -59.2 NC_005887.1 + 2868 0.72 0.185972
Target:  5'- -cCGCaGGCGgUGGaUAACGCGCAGGCg -3'
miRNA:   3'- gaGCG-CUGCaGCCgGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 17530 0.72 0.190965
Target:  5'- gCUCGagggcggcaUGACGUCGGUCGGCGCGUAcuGGa -3'
miRNA:   3'- -GAGC---------GCUGCAGCCGGUUGCGCGU--CCg -5'
28118 3' -59.2 NC_005887.1 + 35473 0.72 0.196075
Target:  5'- aCUCGUgGGCGaaGGCCgu-GCGCGGGCg -3'
miRNA:   3'- -GAGCG-CUGCagCCGGuugCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 29407 0.72 0.198153
Target:  5'- gUCGCGAucaggcucgacagcuCGUCGGCCGAguagucgucgGCGuCAGGCg -3'
miRNA:   3'- gAGCGCU---------------GCAGCCGGUUg---------CGC-GUCCG- -5'
28118 3' -59.2 NC_005887.1 + 36971 0.72 0.199723
Target:  5'- gUCuCGGCGUCGcgcgggucgagcucGCCGgcgagcACGCGCAGGCc -3'
miRNA:   3'- gAGcGCUGCAGC--------------CGGU------UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 40212 0.72 0.201304
Target:  5'- -aCGCGGCGagcgCGGCgcgCAGCGCGCaccgcacgcuguAGGCg -3'
miRNA:   3'- gaGCGCUGCa---GCCG---GUUGCGCG------------UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.