Results 21 - 40 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28118 | 3' | -59.2 | NC_005887.1 | + | 392 | 0.66 | 0.44804 |
Target: 5'- gCUCGCGcACuuccUCGGUguACGCGCGcaccgcGGCc -3' miRNA: 3'- -GAGCGC-UGc---AGCCGguUGCGCGU------CCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 15900 | 0.66 | 0.428947 |
Target: 5'- gCUCGaCG-CGcagcUGGCCGAccugcguucCGCGCGGGCc -3' miRNA: 3'- -GAGC-GCuGCa---GCCGGUU---------GCGCGUCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 33931 | 0.66 | 0.428947 |
Target: 5'- --aGCGcUGUCGGCU-GC-CGCAGGCu -3' miRNA: 3'- gagCGCuGCAGCCGGuUGcGCGUCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 4624 | 0.66 | 0.438434 |
Target: 5'- -cCGCGGCGccggUGGCCGccgGCGCGaucaAGGa -3' miRNA: 3'- gaGCGCUGCa---GCCGGU---UGCGCg---UCCg -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 25108 | 0.66 | 0.446109 |
Target: 5'- uUCGCGACcgguuGUcCGGCCGagauccaGCGCcgcagcuGCAGGUc -3' miRNA: 3'- gAGCGCUG-----CA-GCCGGU-------UGCG-------CGUCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 33866 | 0.66 | 0.428947 |
Target: 5'- -cCGCGugGU-GGCCGugggucCGCGCuuGGUg -3' miRNA: 3'- gaGCGCugCAgCCGGUu-----GCGCGu-CCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 11469 | 0.66 | 0.428947 |
Target: 5'- gCUCGCGAacaaucaGgcagagcaGGUCuACGCGCAGGg -3' miRNA: 3'- -GAGCGCUg------Cag------CCGGuUGCGCGUCCg -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 15439 | 0.66 | 0.44804 |
Target: 5'- -gCGCGGCGUCGaCC--UGCuCGGGCg -3' miRNA: 3'- gaGCGCUGCAGCcGGuuGCGcGUCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 26404 | 0.66 | 0.44804 |
Target: 5'- uUCGCGcACc-CGGCCAGCGCcgGCcacGGCc -3' miRNA: 3'- gAGCGC-UGcaGCCGGUUGCG--CGu--CCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 5815 | 0.66 | 0.467594 |
Target: 5'- --gGCGGCGaUCGaGUCGGCGCGggucgcgaaGGGCg -3' miRNA: 3'- gagCGCUGC-AGC-CGGUUGCGCg--------UCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 13882 | 0.66 | 0.477535 |
Target: 5'- uUCGCGAgcuacCGGCUcguGCGCGUcGGCa -3' miRNA: 3'- gAGCGCUgca--GCCGGu--UGCGCGuCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 27254 | 0.66 | 0.428947 |
Target: 5'- aUCGCG-CGcCGGCCcGCGuCGCcaaugaucGGCa -3' miRNA: 3'- gAGCGCuGCaGCCGGuUGC-GCGu-------CCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 16489 | 0.66 | 0.457761 |
Target: 5'- aUC-CGGCGggcUGGUCGGCGauguCGCAGGCc -3' miRNA: 3'- gAGcGCUGCa--GCCGGUUGC----GCGUCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 6816 | 0.66 | 0.457761 |
Target: 5'- -gCGCGAC--UGGCgcuaCGugGCGCGGGUc -3' miRNA: 3'- gaGCGCUGcaGCCG----GUugCGCGUCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 13149 | 0.66 | 0.467594 |
Target: 5'- cCUCGUcuCGUCGcuuGCCGcgcGCGCGCAGacaGCg -3' miRNA: 3'- -GAGCGcuGCAGC---CGGU---UGCGCGUC---CG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 17630 | 0.66 | 0.467594 |
Target: 5'- -cUGCGcACGaCGGUCAGCGCcgugaagcuGCAGGg -3' miRNA: 3'- gaGCGC-UGCaGCCGGUUGCG---------CGUCCg -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 12603 | 0.66 | 0.467594 |
Target: 5'- -cCGCGACGcUCGGCguGCuGaCGCAGaaGCc -3' miRNA: 3'- gaGCGCUGC-AGCCGguUG-C-GCGUC--CG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 15843 | 0.67 | 0.410343 |
Target: 5'- -gCGCGGCG-CGaucgagggaaacGCCcGCGCGCAgcaGGCg -3' miRNA: 3'- gaGCGCUGCaGC------------CGGuUGCGCGU---CCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 16522 | 0.67 | 0.40123 |
Target: 5'- aUCGCGuCG-CcGCCGGCGCcgaGUGGGCg -3' miRNA: 3'- gAGCGCuGCaGcCGGUUGCG---CGUCCG- -5' |
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28118 | 3' | -59.2 | NC_005887.1 | + | 26209 | 0.67 | 0.40123 |
Target: 5'- --gGCGGCGgUGGCCGGCcuGCaGCuGGCg -3' miRNA: 3'- gagCGCUGCaGCCGGUUG--CG-CGuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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