miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 4624 0.66 0.438434
Target:  5'- -cCGCGGCGccggUGGCCGccgGCGCGaucaAGGa -3'
miRNA:   3'- gaGCGCUGCa---GCCGGU---UGCGCg---UCCg -5'
28118 3' -59.2 NC_005887.1 + 4692 0.71 0.223446
Target:  5'- aUCGCGcCGgCGGCCAccgGCGCcGC-GGCg -3'
miRNA:   3'- gAGCGCuGCaGCCGGU---UGCG-CGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 4885 0.74 0.138262
Target:  5'- gCUCGCGACGauggUCgccgagGGCCGGCGCG-AGGUg -3'
miRNA:   3'- -GAGCGCUGC----AG------CCGGUUGCGCgUCCG- -5'
28118 3' -59.2 NC_005887.1 + 5090 0.67 0.410343
Target:  5'- uUCGuUGGCuUCGGUCuGCGCcucgGCGGGCg -3'
miRNA:   3'- gAGC-GCUGcAGCCGGuUGCG----CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 5206 0.69 0.287897
Target:  5'- -gCGcCGACGUCGGgCAGCGCggucaugccgaGCuuGGCg -3'
miRNA:   3'- gaGC-GCUGCAGCCgGUUGCG-----------CGu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 5491 0.72 0.176331
Target:  5'- -gCGCGugGUCGcGCCGGuCGCuGCGGcGCc -3'
miRNA:   3'- gaGCGCugCAGC-CGGUU-GCG-CGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 5815 0.66 0.467594
Target:  5'- --gGCGGCGaUCGaGUCGGCGCGggucgcgaaGGGCg -3'
miRNA:   3'- gagCGCUGC-AGC-CGGUUGCGCg--------UCCG- -5'
28118 3' -59.2 NC_005887.1 + 6816 0.66 0.457761
Target:  5'- -gCGCGAC--UGGCgcuaCGugGCGCGGGUc -3'
miRNA:   3'- gaGCGCUGcaGCCG----GUugCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 6864 1.12 0.000209
Target:  5'- cCUCGCGACGUCGGCCAACGCGCAGGCg -3'
miRNA:   3'- -GAGCGCUGCAGCCGGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 6929 0.74 0.142088
Target:  5'- -cUGCG-CGUUGGCCGACGuCGCgAGGUc -3'
miRNA:   3'- gaGCGCuGCAGCCGGUUGC-GCG-UCCG- -5'
28118 3' -59.2 NC_005887.1 + 7057 0.67 0.410343
Target:  5'- uUCGCGAucuUGUCGacgauGCCGAgGCGCAG-Cu -3'
miRNA:   3'- gAGCGCU---GCAGC-----CGGUUgCGCGUCcG- -5'
28118 3' -59.2 NC_005887.1 + 8175 0.66 0.428947
Target:  5'- --aGCGGCGccUCGGCgAGCGCgGCGaGCu -3'
miRNA:   3'- gagCGCUGC--AGCCGgUUGCG-CGUcCG- -5'
28118 3' -59.2 NC_005887.1 + 8439 0.67 0.374681
Target:  5'- gUCGCGcucuGCGUCaGGCUuu--CGCAGGCu -3'
miRNA:   3'- gAGCGC----UGCAG-CCGGuugcGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 8929 0.7 0.260505
Target:  5'- gUCGCGAUcUCGaCgGGCGCGCcGGCg -3'
miRNA:   3'- gAGCGCUGcAGCcGgUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 9208 0.66 0.457761
Target:  5'- -gUGcCGACGUCGGacggccugaauaCCGAUGCGCuuGCg -3'
miRNA:   3'- gaGC-GCUGCAGCC------------GGUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 9259 0.68 0.355147
Target:  5'- aUCGCGucuaucugugcacgGCgGUCGGCacggCGACGCcGCAGGUu -3'
miRNA:   3'- gAGCGC--------------UG-CAGCCG----GUUGCG-CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 9908 0.67 0.386922
Target:  5'- -gCGCGGCGUucagguUGGCCGcgcugaccggcugcgACGCGUucgcGGGCc -3'
miRNA:   3'- gaGCGCUGCA------GCCGGU---------------UGCGCG----UCCG- -5'
28118 3' -59.2 NC_005887.1 + 10091 0.67 0.374681
Target:  5'- gUCGUGugGgCGGCC--CGCGCcgacGGCc -3'
miRNA:   3'- gAGCGCugCaGCCGGuuGCGCGu---CCG- -5'
28118 3' -59.2 NC_005887.1 + 10462 0.69 0.302422
Target:  5'- aUCGCGuACGguuaCGGCCGGCGCGaucacGCu -3'
miRNA:   3'- gAGCGC-UGCa---GCCGGUUGCGCguc--CG- -5'
28118 3' -59.2 NC_005887.1 + 10713 0.69 0.302422
Target:  5'- gUCGuCGaACGUUGGcCCAACGaCGCcgcccAGGCu -3'
miRNA:   3'- gAGC-GC-UGCAGCC-GGUUGC-GCG-----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.