miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 392 0.66 0.44804
Target:  5'- gCUCGCGcACuuccUCGGUguACGCGCGcaccgcGGCc -3'
miRNA:   3'- -GAGCGC-UGc---AGCCGguUGCGCGU------CCG- -5'
28118 3' -59.2 NC_005887.1 + 523 0.67 0.419582
Target:  5'- gUCGaucugaacGCGUCGGCCGccGCGCGCcGcGCc -3'
miRNA:   3'- gAGCgc------UGCAGCCGGU--UGCGCGuC-CG- -5'
28118 3' -59.2 NC_005887.1 + 598 0.71 0.212127
Target:  5'- -gCGCGGCGcgcggCGGCCGACGCGUucAGa- -3'
miRNA:   3'- gaGCGCUGCa----GCCGGUUGCGCG--UCcg -5'
28118 3' -59.2 NC_005887.1 + 971 0.69 0.29509
Target:  5'- gUCGCGACGcggaucgaagccgaGGCCGccugacucguccgGCgGCGCGGGCc -3'
miRNA:   3'- gAGCGCUGCag------------CCGGU-------------UG-CGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 1060 0.68 0.349346
Target:  5'- -gCGCGcACGgCGGCCGGCaauuuGCGCGugucGGCg -3'
miRNA:   3'- gaGCGC-UGCaGCCGGUUG-----CGCGU----CCG- -5'
28118 3' -59.2 NC_005887.1 + 1483 0.68 0.349346
Target:  5'- -cCGaCGGCGUgCGGCgcuCGCGCGGcGCg -3'
miRNA:   3'- gaGC-GCUGCA-GCCGguuGCGCGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 1851 0.78 0.077024
Target:  5'- uUCGgGuag-CGGCCGACGCGCAGGUc -3'
miRNA:   3'- gAGCgCugcaGCCGGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 2346 0.67 0.383397
Target:  5'- aUC-CGGCGggCGaCCAGCGCucGCAGGCc -3'
miRNA:   3'- gAGcGCUGCa-GCcGGUUGCG--CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 2425 0.66 0.467594
Target:  5'- uUCGU--CGUCGGCCugcgaGCGCuGGUc -3'
miRNA:   3'- gAGCGcuGCAGCCGGuug--CGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 2518 0.7 0.273927
Target:  5'- cCUCGuCGACGgc-GCCGuaGCGCGCgAGGUg -3'
miRNA:   3'- -GAGC-GCUGCagcCGGU--UGCGCG-UCCG- -5'
28118 3' -59.2 NC_005887.1 + 2868 0.72 0.185972
Target:  5'- -cCGCaGGCGgUGGaUAACGCGCAGGCg -3'
miRNA:   3'- gaGCG-CUGCaGCCgGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 2971 0.66 0.477535
Target:  5'- --gGCGGCGUcguucgcggCGGCCGACGUGUccGUc -3'
miRNA:   3'- gagCGCUGCA---------GCCGGUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 3006 0.69 0.302422
Target:  5'- gUCGCGGCGgugccgCGGCgcuUGCGCAgcuuGGCg -3'
miRNA:   3'- gAGCGCUGCa-----GCCGguuGCGCGU----CCG- -5'
28118 3' -59.2 NC_005887.1 + 3009 0.77 0.083836
Target:  5'- -aCGCGccugCGGCCAGCGcCGCGGGCa -3'
miRNA:   3'- gaGCGCugcaGCCGGUUGC-GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 3074 0.66 0.428947
Target:  5'- -cCGCGGCGcUGGCCGcagGCGCGUugacGGa -3'
miRNA:   3'- gaGCGCUGCaGCCGGU---UGCGCGu---CCg -5'
28118 3' -59.2 NC_005887.1 + 3149 0.66 0.428947
Target:  5'- -aUGCGGCcgugGUCGGCguuCAGCGCcuGCAGGa -3'
miRNA:   3'- gaGCGCUG----CAGCCG---GUUGCG--CGUCCg -5'
28118 3' -59.2 NC_005887.1 + 3326 0.67 0.410343
Target:  5'- aUCGCGGCGaCGaaguuGCgCAGCGCGagcGGCg -3'
miRNA:   3'- gAGCGCUGCaGC-----CG-GUUGCGCgu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 3555 0.74 0.142088
Target:  5'- cCUUGcCGACGUCGuGCucgaucauCAGCGCGcCAGGCc -3'
miRNA:   3'- -GAGC-GCUGCAGC-CG--------GUUGCGC-GUCCG- -5'
28118 3' -59.2 NC_005887.1 + 3786 0.74 0.142088
Target:  5'- gCUUGCG-CGgaucgCGGUCGGCGCGC-GGCu -3'
miRNA:   3'- -GAGCGCuGCa----GCCGGUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 4307 0.67 0.40123
Target:  5'- cCUCGcCGAgGcCGGCCAGCuGCcggacaugccGCAGGa -3'
miRNA:   3'- -GAGC-GCUgCaGCCGGUUG-CG----------CGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.