miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 41958 0.73 0.167138
Target:  5'- gCUCGCGugGUgCGuGCgCGGCGCGCucGCc -3'
miRNA:   3'- -GAGCGCugCA-GC-CG-GUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 41719 0.73 0.165796
Target:  5'- --gGCGAUGaCGGgcggcgauccgaucCCGGCGCGCGGGCu -3'
miRNA:   3'- gagCGCUGCaGCC--------------GGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 41326 0.68 0.341177
Target:  5'- gUCGaCGGCGcCauuGCCGACGCcgaGCAGGUg -3'
miRNA:   3'- gAGC-GCUGCaGc--CGGUUGCG---CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 41288 0.67 0.410343
Target:  5'- gCUUGuCGAgcUCGGUCAcgggcacgacgACGCGCGGGUc -3'
miRNA:   3'- -GAGC-GCUgcAGCCGGU-----------UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 41257 0.67 0.378151
Target:  5'- -gCuCGGCGUCGGCaAugGCGCcgucgaccugcgcacGGGCg -3'
miRNA:   3'- gaGcGCUGCAGCCGgUugCGCG---------------UCCG- -5'
28118 3' -59.2 NC_005887.1 + 40829 0.71 0.234671
Target:  5'- gCUCgGCGGCGcgcggCGcGCCAACGgcgaucgccucgaCGCGGGCg -3'
miRNA:   3'- -GAG-CGCUGCa----GC-CGGUUGC-------------GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 40682 0.67 0.409426
Target:  5'- uCUUGcCGAUGUgCGGCCAcacACGCucgucgaggaaccGCGGGUu -3'
miRNA:   3'- -GAGC-GCUGCA-GCCGGU---UGCG-------------CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 40502 0.72 0.178223
Target:  5'- -gCGCGACGUCGuGUucggcauccaccacgCGGCGCGC-GGCa -3'
miRNA:   3'- gaGCGCUGCAGC-CG---------------GUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 40427 0.7 0.247624
Target:  5'- -gCGCGACGgCGGCaCGGcCGCGCucgacGGCc -3'
miRNA:   3'- gaGCGCUGCaGCCG-GUU-GCGCGu----CCG- -5'
28118 3' -59.2 NC_005887.1 + 40395 0.73 0.17168
Target:  5'- aUCGUGAUGcccggcaCGGCCGACGUGCcGGUc -3'
miRNA:   3'- gAGCGCUGCa------GCCGGUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 40212 0.72 0.201304
Target:  5'- -aCGCGGCGagcgCGGCgcgCAGCGCGCaccgcacgcuguAGGCg -3'
miRNA:   3'- gaGCGCUGCa---GCCG---GUUGCGCG------------UCCG- -5'
28118 3' -59.2 NC_005887.1 + 40002 0.68 0.349346
Target:  5'- -aCGCGaugcGCGUC-GUCGACGCGCccGGCu -3'
miRNA:   3'- gaGCGC----UGCAGcCGGUUGCGCGu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 39896 0.66 0.428947
Target:  5'- -gUGCGACGgCGGCCcgucGCGCuuuauccaGCAGuGCg -3'
miRNA:   3'- gaGCGCUGCaGCCGGu---UGCG--------CGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 39778 0.68 0.341177
Target:  5'- gUCGCGGCGcUCGcGCCGaucguuGCGCGCGu-- -3'
miRNA:   3'- gAGCGCUGC-AGC-CGGU------UGCGCGUccg -5'
28118 3' -59.2 NC_005887.1 + 39181 0.7 0.253997
Target:  5'- -gCGCGAgaucccgaacaCGUCGGCCAACuGCuGCAGcGUc -3'
miRNA:   3'- gaGCGCU-----------GCAGCCGGUUG-CG-CGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 38507 0.69 0.280843
Target:  5'- gCUCGUGGCGgguaUCGGUCuGGCGgGUAGGg -3'
miRNA:   3'- -GAGCGCUGC----AGCCGG-UUGCgCGUCCg -5'
28118 3' -59.2 NC_005887.1 + 38168 0.68 0.366099
Target:  5'- gCUCGCGAUGgagcaCGGCaAGCGCGaCGaGCa -3'
miRNA:   3'- -GAGCGCUGCa----GCCGgUUGCGC-GUcCG- -5'
28118 3' -59.2 NC_005887.1 + 36971 0.72 0.199723
Target:  5'- gUCuCGGCGUCGcgcgggucgagcucGCCGgcgagcACGCGCAGGCc -3'
miRNA:   3'- gAGcGCUGCAGC--------------CGGU------UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 36861 0.7 0.274612
Target:  5'- aUCGCGACGcgcgccuguuccuggUGGUCAACGUG-GGGCa -3'
miRNA:   3'- gAGCGCUGCa--------------GCCGGUUGCGCgUCCG- -5'
28118 3' -59.2 NC_005887.1 + 36376 0.73 0.150031
Target:  5'- -gCGCGGCGUCGaCCGcCGCGCAgaucGGCc -3'
miRNA:   3'- gaGCGCUGCAGCcGGUuGCGCGU----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.