miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 6864 1.12 0.000209
Target:  5'- cCUCGCGACGUCGGCCAACGCGCAGGCg -3'
miRNA:   3'- -GAGCGCUGCAGCCGGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 28405 0.82 0.036574
Target:  5'- -aCGCGcACGUCGcaGCCGagcGCGCGCAGGCg -3'
miRNA:   3'- gaGCGC-UGCAGC--CGGU---UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 14702 0.8 0.050217
Target:  5'- gUCGCGGCGggcgGGCCGGgcgcggcgauCGCGCAGGCg -3'
miRNA:   3'- gAGCGCUGCag--CCGGUU----------GCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 14378 0.8 0.051679
Target:  5'- gCUUGuCGGCGUCGGCCuGCGCuuGCGGGUu -3'
miRNA:   3'- -GAGC-GCUGCAGCCGGuUGCG--CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 23245 0.78 0.066835
Target:  5'- --aGCGGCGgCGGUCGGCGCGCAaaaGGCg -3'
miRNA:   3'- gagCGCUGCaGCCGGUUGCGCGU---CCG- -5'
28118 3' -59.2 NC_005887.1 + 1851 0.78 0.077024
Target:  5'- uUCGgGuag-CGGCCGACGCGCAGGUc -3'
miRNA:   3'- gAGCgCugcaGCCGGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 15581 0.78 0.077024
Target:  5'- cCUCGCGACGUCcggaaacuGGCCGgcguccaucugACGCGC-GGCc -3'
miRNA:   3'- -GAGCGCUGCAG--------CCGGU-----------UGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 11796 0.78 0.077024
Target:  5'- gCUCgGCGGCGUCGGUUcguACGCuaagGCAGGCg -3'
miRNA:   3'- -GAG-CGCUGCAGCCGGu--UGCG----CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 23500 0.77 0.081504
Target:  5'- gCUUGcCGACGuguUCGGCCGcgcugacgaACGCGCGGGUg -3'
miRNA:   3'- -GAGC-GCUGC---AGCCGGU---------UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 3009 0.77 0.083836
Target:  5'- -aCGCGccugCGGCCAGCGcCGCGGGCa -3'
miRNA:   3'- gaGCGCugcaGCCGGUUGC-GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 30598 0.77 0.086231
Target:  5'- -gCGUGGCGucUCGGCCGACGgccgccuaCGCGGGCu -3'
miRNA:   3'- gaGCGCUGC--AGCCGGUUGC--------GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 30267 0.77 0.088691
Target:  5'- -aCGCGGCGUggcUGGCCGGCGagaaguggaagcUGCAGGCg -3'
miRNA:   3'- gaGCGCUGCA---GCCGGUUGC------------GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 16257 0.76 0.093814
Target:  5'- gUCGCaGCG-CGGCCucuuCGCGCAGGUu -3'
miRNA:   3'- gAGCGcUGCaGCCGGuu--GCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 26985 0.76 0.093814
Target:  5'- uUCGuCGACGgCGGCCAGCGaCuCGGGCg -3'
miRNA:   3'- gAGC-GCUGCaGCCGGUUGC-GcGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 13633 0.76 0.107872
Target:  5'- uUCGCGuCGUCGGCCugcuCGgGC-GGCa -3'
miRNA:   3'- gAGCGCuGCAGCCGGuu--GCgCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 30744 0.75 0.120518
Target:  5'- uUCGCGAcuucgcCGUCGGUCAgcucgaccguGCGCGC-GGCg -3'
miRNA:   3'- gAGCGCU------GCAGCCGGU----------UGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 21272 0.74 0.127347
Target:  5'- -cCGCGGCGgCGGCguAUGCGCugcuGGCg -3'
miRNA:   3'- gaGCGCUGCaGCCGguUGCGCGu---CCG- -5'
28118 3' -59.2 NC_005887.1 + 35937 0.74 0.138262
Target:  5'- -gCGCGGCGUCGcggugucuGCCgAGCGCaauccGCAGGCg -3'
miRNA:   3'- gaGCGCUGCAGC--------CGG-UUGCG-----CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 4885 0.74 0.138262
Target:  5'- gCUCGCGACGauggUCgccgagGGCCGGCGCG-AGGUg -3'
miRNA:   3'- -GAGCGCUGC----AG------CCGGUUGCGCgUCCG- -5'
28118 3' -59.2 NC_005887.1 + 6929 0.74 0.142088
Target:  5'- -cUGCG-CGUUGGCCGACGuCGCgAGGUc -3'
miRNA:   3'- gaGCGCuGCAGCCGGUUGC-GCG-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.