miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 29407 0.72 0.198153
Target:  5'- gUCGCGAucaggcucgacagcuCGUCGGCCGAguagucgucgGCGuCAGGCg -3'
miRNA:   3'- gAGCGCU---------------GCAGCCGGUUg---------CGC-GUCCG- -5'
28118 3' -59.2 NC_005887.1 + 41958 0.73 0.167138
Target:  5'- gCUCGCGugGUgCGuGCgCGGCGCGCucGCc -3'
miRNA:   3'- -GAGCGCugCA-GC-CG-GUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 40395 0.73 0.17168
Target:  5'- aUCGUGAUGcccggcaCGGCCGACGUGCcGGUc -3'
miRNA:   3'- gAGCGCUGCa------GCCGGUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 30920 0.72 0.176331
Target:  5'- -gCGCGGCaUCGccuuguGCCAGCGCGCucGGCg -3'
miRNA:   3'- gaGCGCUGcAGC------CGGUUGCGCGu-CCG- -5'
28118 3' -59.2 NC_005887.1 + 40502 0.72 0.178223
Target:  5'- -gCGCGACGUCGuGUucggcauccaccacgCGGCGCGC-GGCa -3'
miRNA:   3'- gaGCGCUGCAGC-CG---------------GUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 24941 0.72 0.181095
Target:  5'- aUCGCGACG-CGu---GCGCGCGGGCc -3'
miRNA:   3'- gAGCGCUGCaGCcgguUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 27318 0.72 0.18548
Target:  5'- uCUCGCacuCGUcCGGCCAcgucgacugcgccACGCGCAgcGGCg -3'
miRNA:   3'- -GAGCGcu-GCA-GCCGGU-------------UGCGCGU--CCG- -5'
28118 3' -59.2 NC_005887.1 + 2868 0.72 0.185972
Target:  5'- -cCGCaGGCGgUGGaUAACGCGCAGGCg -3'
miRNA:   3'- gaGCG-CUGCaGCCgGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 17530 0.72 0.190965
Target:  5'- gCUCGagggcggcaUGACGUCGGUCGGCGCGUAcuGGa -3'
miRNA:   3'- -GAGC---------GCUGCAGCCGGUUGCGCGU--CCg -5'
28118 3' -59.2 NC_005887.1 + 41719 0.73 0.165796
Target:  5'- --gGCGAUGaCGGgcggcgauccgaucCCGGCGCGCGGGCu -3'
miRNA:   3'- gagCGCUGCaGCC--------------GGUUGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 33735 0.73 0.150031
Target:  5'- aUCGCGGCGa-GGaUCAGCGCGCcGGCc -3'
miRNA:   3'- gAGCGCUGCagCC-GGUUGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 4885 0.74 0.138262
Target:  5'- gCUCGCGACGauggUCgccgagGGCCGGCGCG-AGGUg -3'
miRNA:   3'- -GAGCGCUGC----AG------CCGGUUGCGCgUCCG- -5'
28118 3' -59.2 NC_005887.1 + 28405 0.82 0.036574
Target:  5'- -aCGCGcACGUCGcaGCCGagcGCGCGCAGGCg -3'
miRNA:   3'- gaGCGC-UGCAGC--CGGU---UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 14702 0.8 0.050217
Target:  5'- gUCGCGGCGggcgGGCCGGgcgcggcgauCGCGCAGGCg -3'
miRNA:   3'- gAGCGCUGCag--CCGGUU----------GCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 23245 0.78 0.066835
Target:  5'- --aGCGGCGgCGGUCGGCGCGCAaaaGGCg -3'
miRNA:   3'- gagCGCUGCaGCCGGUUGCGCGU---CCG- -5'
28118 3' -59.2 NC_005887.1 + 11796 0.78 0.077024
Target:  5'- gCUCgGCGGCGUCGGUUcguACGCuaagGCAGGCg -3'
miRNA:   3'- -GAG-CGCUGCAGCCGGu--UGCG----CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 23500 0.77 0.081504
Target:  5'- gCUUGcCGACGuguUCGGCCGcgcugacgaACGCGCGGGUg -3'
miRNA:   3'- -GAGC-GCUGC---AGCCGGU---------UGCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 3009 0.77 0.083836
Target:  5'- -aCGCGccugCGGCCAGCGcCGCGGGCa -3'
miRNA:   3'- gaGCGCugcaGCCGGUUGC-GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 30744 0.75 0.120518
Target:  5'- uUCGCGAcuucgcCGUCGGUCAgcucgaccguGCGCGC-GGCg -3'
miRNA:   3'- gAGCGCU------GCAGCCGGU----------UGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 21272 0.74 0.127347
Target:  5'- -cCGCGGCGgCGGCguAUGCGCugcuGGCg -3'
miRNA:   3'- gaGCGCUGCaGCCGguUGCGCGu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.