miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 2971 0.66 0.477535
Target:  5'- --gGCGGCGUcguucgcggCGGCCGACGUGUccGUc -3'
miRNA:   3'- gagCGCUGCA---------GCCGGUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 3149 0.66 0.428947
Target:  5'- -aUGCGGCcgugGUCGGCguuCAGCGCcuGCAGGa -3'
miRNA:   3'- gaGCGCUG----CAGCCG---GUUGCG--CGUCCg -5'
28118 3' -59.2 NC_005887.1 + 32820 0.66 0.428947
Target:  5'- -cUGCauGGCG-CGcGCCGGCGCGCAcGCg -3'
miRNA:   3'- gaGCG--CUGCaGC-CGGUUGCGCGUcCG- -5'
28118 3' -59.2 NC_005887.1 + 14378 0.8 0.051679
Target:  5'- gCUUGuCGGCGUCGGCCuGCGCuuGCGGGUu -3'
miRNA:   3'- -GAGC-GCUGCAGCCGGuUGCG--CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 14083 0.66 0.467594
Target:  5'- --gGCGGCGcgcCGGCgGuugcggagGCGCGCGGcGCa -3'
miRNA:   3'- gagCGCUGCa--GCCGgU--------UGCGCGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 29162 0.66 0.457761
Target:  5'- gUCGCGAcCGaCGGUCAcaaG-GCGGGCg -3'
miRNA:   3'- gAGCGCU-GCaGCCGGUug-CgCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 15439 0.66 0.44804
Target:  5'- -gCGCGGCGUCGaCC--UGCuCGGGCg -3'
miRNA:   3'- gaGCGCUGCAGCcGGuuGCGcGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 26404 0.66 0.44804
Target:  5'- uUCGCGcACc-CGGCCAGCGCcgGCcacGGCc -3'
miRNA:   3'- gAGCGC-UGcaGCCGGUUGCG--CGu--CCG- -5'
28118 3' -59.2 NC_005887.1 + 16387 0.66 0.447074
Target:  5'- uUCGCGGCGaccucgaacaGGCCGGCGUccuGCguguucaAGGCg -3'
miRNA:   3'- gAGCGCUGCag--------CCGGUUGCG---CG-------UCCG- -5'
28118 3' -59.2 NC_005887.1 + 3074 0.66 0.428947
Target:  5'- -cCGCGGCGcUGGCCGcagGCGCGUugacGGa -3'
miRNA:   3'- gaGCGCUGCaGCCGGU---UGCGCGu---CCg -5'
28118 3' -59.2 NC_005887.1 + 36128 0.66 0.438434
Target:  5'- aUCGaCGGCGUgcGCgAGCGCGUcgAGGCc -3'
miRNA:   3'- gAGC-GCUGCAgcCGgUUGCGCG--UCCG- -5'
28118 3' -59.2 NC_005887.1 + 16015 0.66 0.44804
Target:  5'- --aGCGGCGUgCGGCgCGugGC-CGGcGCa -3'
miRNA:   3'- gagCGCUGCA-GCCG-GUugCGcGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 16062 0.66 0.477535
Target:  5'- gCUCGCGGCG--GGUCuGCGCGC--GCa -3'
miRNA:   3'- -GAGCGCUGCagCCGGuUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 22839 0.66 0.438434
Target:  5'- -gCGcCGGCGUCGaGCCAACGaGCAcGUu -3'
miRNA:   3'- gaGC-GCUGCAGC-CGGUUGCgCGUcCG- -5'
28118 3' -59.2 NC_005887.1 + 34012 0.66 0.477535
Target:  5'- -aCGCGACGUgcucGCCgAGCGCcgucgGCAGGUc -3'
miRNA:   3'- gaGCGCUGCAgc--CGG-UUGCG-----CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 392 0.66 0.44804
Target:  5'- gCUCGCGcACuuccUCGGUguACGCGCGcaccgcGGCc -3'
miRNA:   3'- -GAGCGC-UGc---AGCCGguUGCGCGU------CCG- -5'
28118 3' -59.2 NC_005887.1 + 17741 0.66 0.428947
Target:  5'- aUCGUgccGACGUC-GCCAA-GCGC-GGCg -3'
miRNA:   3'- gAGCG---CUGCAGcCGGUUgCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 8175 0.66 0.428947
Target:  5'- --aGCGGCGccUCGGCgAGCGCgGCGaGCu -3'
miRNA:   3'- gagCGCUGC--AGCCGgUUGCG-CGUcCG- -5'
28118 3' -59.2 NC_005887.1 + 2425 0.66 0.467594
Target:  5'- uUCGU--CGUCGGCCugcgaGCGCuGGUc -3'
miRNA:   3'- gAGCGcuGCAGCCGGuug--CGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 9208 0.66 0.457761
Target:  5'- -gUGcCGACGUCGGacggccugaauaCCGAUGCGCuuGCg -3'
miRNA:   3'- gaGC-GCUGCAGCC------------GGUUGCGCGucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.