Results 41 - 60 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28119 | 3' | -57 | NC_005887.1 | + | 14663 | 0.68 | 0.433226 |
Target: 5'- -cCCGUCGCCGguUCGACGcugccccGCACGAUc- -3' miRNA: 3'- caGGCAGCGGC--GGCUGU-------UGUGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 2460 | 0.68 | 0.424601 |
Target: 5'- --aCGgCGCCGUCGACGAgGCG-CUGa -3' miRNA: 3'- cagGCaGCGGCGGCUGUUgUGCuGAC- -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 41355 | 0.68 | 0.423649 |
Target: 5'- aUCCGcgCGCCGCCGggaagcuguucgaGCAgaccguGCGCGACg- -3' miRNA: 3'- cAGGCa-GCGGCGGC-------------UGU------UGUGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 2779 | 0.68 | 0.415138 |
Target: 5'- aGUCCGUCGUCGCgCGGCu---CGGCc- -3' miRNA: 3'- -CAGGCAGCGGCG-GCUGuuguGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 16585 | 0.69 | 0.405806 |
Target: 5'- -cUCGgCGCCGgCGGCGACGCGAUc- -3' miRNA: 3'- caGGCaGCGGCgGCUGUUGUGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 26707 | 0.69 | 0.396608 |
Target: 5'- -gCCGUCgcgcgGCCGCgGGCAGCuCGACa- -3' miRNA: 3'- caGGCAG-----CGGCGgCUGUUGuGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 17977 | 0.69 | 0.396608 |
Target: 5'- cGUCCGUccaaccugugaCGCCGCCGAacuuCAucguCGCGGCg- -3' miRNA: 3'- -CAGGCA-----------GCGGCGGCU----GUu---GUGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 21492 | 0.69 | 0.378618 |
Target: 5'- --gCGUCGUCGCCGaaacaGCGGCAgGugUGg -3' miRNA: 3'- cagGCAGCGGCGGC-----UGUUGUgCugAC- -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 32485 | 0.69 | 0.378618 |
Target: 5'- -gCCGgccacaUCGCCGCCGGCcACGuCGACg- -3' miRNA: 3'- caGGC------AGCGGCGGCUGuUGU-GCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 9828 | 0.69 | 0.378618 |
Target: 5'- --gCGUCGCaGCCGGuCAGCGCGGCc- -3' miRNA: 3'- cagGCAGCGgCGGCU-GUUGUGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 11852 | 0.69 | 0.36983 |
Target: 5'- -aCCGaCGCCGCCGAgCAGCGagGACg- -3' miRNA: 3'- caGGCaGCGGCGGCU-GUUGUg-CUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 10206 | 0.69 | 0.36983 |
Target: 5'- aGUgCGUCGCgucgaugcccgCGCCgGACGGCGCGuCUGa -3' miRNA: 3'- -CAgGCAGCG-----------GCGG-CUGUUGUGCuGAC- -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 29560 | 0.7 | 0.361184 |
Target: 5'- -gCCGUCgagGCCGCCGGC--UACGACa- -3' miRNA: 3'- caGGCAG---CGGCGGCUGuuGUGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 33999 | 0.7 | 0.361184 |
Target: 5'- -gCCGagCGCCGUCGGCAGguCGACg- -3' miRNA: 3'- caGGCa-GCGGCGGCUGUUguGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 21494 | 0.7 | 0.335284 |
Target: 5'- aUCuCGcaUCGCCGCCGGCAAUcggcgcaACGACg- -3' miRNA: 3'- cAG-GC--AGCGGCGGCUGUUG-------UGCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 9053 | 0.71 | 0.312308 |
Target: 5'- -cCCGuUCGCgGCCGugAACAgCGACa- -3' miRNA: 3'- caGGC-AGCGgCGGCugUUGU-GCUGac -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 2986 | 0.71 | 0.304667 |
Target: 5'- cGUCCGUCGUucuuCGuCCGuCAACGCGcCUGc -3' miRNA: 3'- -CAGGCAGCG----GC-GGCuGUUGUGCuGAC- -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 14601 | 0.71 | 0.297171 |
Target: 5'- -gCCGaucgacgCGCCGCCGACGGcCGCGcCUGc -3' miRNA: 3'- caGGCa------GCGGCGGCUGUU-GUGCuGAC- -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 9963 | 0.71 | 0.297171 |
Target: 5'- -aUCGU-GCCGCCGACcuGCAcCGGCUGg -3' miRNA: 3'- caGGCAgCGGCGGCUGu-UGU-GCUGAC- -5' |
|||||||
28119 | 3' | -57 | NC_005887.1 | + | 10087 | 0.71 | 0.282609 |
Target: 5'- uUCCGUCGUgugggcggcccgCGCCGACGGCcagcugauCGGCUGc -3' miRNA: 3'- cAGGCAGCG------------GCGGCUGUUGu-------GCUGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home