miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 38310 0.67 0.504587
Target:  5'- -gCCGUCGCCGuuGuCGAuCAcCGGCUc -3'
miRNA:   3'- caGGCAGCGGCggCuGUU-GU-GCUGAc -5'
28119 3' -57 NC_005887.1 + 28570 0.67 0.494211
Target:  5'- --gCGUCGCCGCCcGCuGCGCgGACg- -3'
miRNA:   3'- cagGCAGCGGCGGcUGuUGUG-CUGac -5'
28119 3' -57 NC_005887.1 + 18680 0.67 0.493178
Target:  5'- -gCCGaucgCGCUGCCGAgCAACGaaccguaaucggcCGACUGg -3'
miRNA:   3'- caGGCa---GCGGCGGCU-GUUGU-------------GCUGAC- -5'
28119 3' -57 NC_005887.1 + 34288 0.67 0.483933
Target:  5'- -gCCGUCGCCGU--GCGGC-UGACUGc -3'
miRNA:   3'- caGGCAGCGGCGgcUGUUGuGCUGAC- -5'
28119 3' -57 NC_005887.1 + 4238 0.67 0.483933
Target:  5'- gGUCaUGUCGCCGCUGuCGACGagGAuCUGg -3'
miRNA:   3'- -CAG-GCAGCGGCGGCuGUUGUg-CU-GAC- -5'
28119 3' -57 NC_005887.1 + 33929 0.67 0.483933
Target:  5'- uUCgCGUCGaCCuGCCGACGGCGCucGGCg- -3'
miRNA:   3'- cAG-GCAGC-GG-CGGCUGUUGUG--CUGac -5'
28119 3' -57 NC_005887.1 + 18412 0.67 0.483933
Target:  5'- -gCCGcggCGCuCGUCGuCAGCACGACg- -3'
miRNA:   3'- caGGCa--GCG-GCGGCuGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 36925 0.67 0.482911
Target:  5'- -aCCGUCGCgGUCGAuguuggucaauuuCAugGCGGCUu -3'
miRNA:   3'- caGGCAGCGgCGGCU-------------GUugUGCUGAc -5'
28119 3' -57 NC_005887.1 + 14943 0.67 0.473759
Target:  5'- -gCCGcgCGCUGCCGuACGACGCGcCg- -3'
miRNA:   3'- caGGCa-GCGGCGGC-UGUUGUGCuGac -5'
28119 3' -57 NC_005887.1 + 10159 0.67 0.473759
Target:  5'- -gCCGUCGgCGCgGGCcgcccACACGACg- -3'
miRNA:   3'- caGGCAGCgGCGgCUGu----UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 12558 0.67 0.473759
Target:  5'- aUCCaG-CGCCGCUGAaucgauCAGCGCGAgCUGa -3'
miRNA:   3'- cAGG-CaGCGGCGGCU------GUUGUGCU-GAC- -5'
28119 3' -57 NC_005887.1 + 34343 0.67 0.473759
Target:  5'- -gCCGUgG-CGCCGGC--CACGGCUGg -3'
miRNA:   3'- caGGCAgCgGCGGCUGuuGUGCUGAC- -5'
28119 3' -57 NC_005887.1 + 38330 0.67 0.473759
Target:  5'- -gUCGUCGCCaCUGACAACAgCGugUc -3'
miRNA:   3'- caGGCAGCGGcGGCUGUUGU-GCugAc -5'
28119 3' -57 NC_005887.1 + 2945 0.67 0.473759
Target:  5'- uGUCCGUCGUCGCCuGCGcguuauccaccGCcuGCGGCa- -3'
miRNA:   3'- -CAGGCAGCGGCGGcUGU-----------UG--UGCUGac -5'
28119 3' -57 NC_005887.1 + 11882 0.68 0.462693
Target:  5'- uUUCGUCGUucggcagCGCCGGCAACuucACGGCg- -3'
miRNA:   3'- cAGGCAGCG-------GCGGCUGUUG---UGCUGac -5'
28119 3' -57 NC_005887.1 + 2716 0.68 0.453741
Target:  5'- -gCCGa-GCCGCgCGACGACG-GACUGa -3'
miRNA:   3'- caGGCagCGGCG-GCUGUUGUgCUGAC- -5'
28119 3' -57 NC_005887.1 + 35068 0.68 0.434191
Target:  5'- -gCCGUCGUCGgCGG--GCGCGACUu -3'
miRNA:   3'- caGGCAGCGGCgGCUguUGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 19010 0.68 0.434191
Target:  5'- cGUgCGUUauugGCCGCCGACGGC-CG-CUGc -3'
miRNA:   3'- -CAgGCAG----CGGCGGCUGUUGuGCuGAC- -5'
28119 3' -57 NC_005887.1 + 22308 0.68 0.434191
Target:  5'- -aCCGUCGCUGaUCGugAaccACGCGACg- -3'
miRNA:   3'- caGGCAGCGGC-GGCugU---UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 29470 0.68 0.434191
Target:  5'- aGUUCGUCGUgGaUgGACAGCACGAUg- -3'
miRNA:   3'- -CAGGCAGCGgC-GgCUGUUGUGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.