miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 32485 0.69 0.378618
Target:  5'- -gCCGgccacaUCGCCGCCGGCcACGuCGACg- -3'
miRNA:   3'- caGGC------AGCGGCGGCUGuUGU-GCUGac -5'
28119 3' -57 NC_005887.1 + 9828 0.69 0.378618
Target:  5'- --gCGUCGCaGCCGGuCAGCGCGGCc- -3'
miRNA:   3'- cagGCAGCGgCGGCU-GUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 17977 0.69 0.396608
Target:  5'- cGUCCGUccaaccugugaCGCCGCCGAacuuCAucguCGCGGCg- -3'
miRNA:   3'- -CAGGCA-----------GCGGCGGCU----GUu---GUGCUGac -5'
28119 3' -57 NC_005887.1 + 26707 0.69 0.396608
Target:  5'- -gCCGUCgcgcgGCCGCgGGCAGCuCGACa- -3'
miRNA:   3'- caGGCAG-----CGGCGgCUGUUGuGCUGac -5'
28119 3' -57 NC_005887.1 + 16585 0.69 0.405806
Target:  5'- -cUCGgCGCCGgCGGCGACGCGAUc- -3'
miRNA:   3'- caGGCaGCGGCgGCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 2779 0.68 0.415138
Target:  5'- aGUCCGUCGUCGCgCGGCu---CGGCc- -3'
miRNA:   3'- -CAGGCAGCGGCG-GCUGuuguGCUGac -5'
28119 3' -57 NC_005887.1 + 41355 0.68 0.423649
Target:  5'- aUCCGcgCGCCGCCGggaagcuguucgaGCAgaccguGCGCGACg- -3'
miRNA:   3'- cAGGCa-GCGGCGGC-------------UGU------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 2460 0.68 0.424601
Target:  5'- --aCGgCGCCGUCGACGAgGCG-CUGa -3'
miRNA:   3'- cagGCaGCGGCGGCUGUUgUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 14663 0.68 0.433226
Target:  5'- -cCCGUCGCCGguUCGACGcugccccGCACGAUc- -3'
miRNA:   3'- caGGCAGCGGC--GGCUGU-------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 29470 0.68 0.434191
Target:  5'- aGUUCGUCGUgGaUgGACAGCACGAUg- -3'
miRNA:   3'- -CAGGCAGCGgC-GgCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 22308 0.68 0.434191
Target:  5'- -aCCGUCGCUGaUCGugAaccACGCGACg- -3'
miRNA:   3'- caGGCAGCGGC-GGCugU---UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 35068 0.68 0.434191
Target:  5'- -gCCGUCGUCGgCGG--GCGCGACUu -3'
miRNA:   3'- caGGCAGCGGCgGCUguUGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 19010 0.68 0.434191
Target:  5'- cGUgCGUUauugGCCGCCGACGGC-CG-CUGc -3'
miRNA:   3'- -CAgGCAG----CGGCGGCUGUUGuGCuGAC- -5'
28119 3' -57 NC_005887.1 + 2716 0.68 0.453741
Target:  5'- -gCCGa-GCCGCgCGACGACG-GACUGa -3'
miRNA:   3'- caGGCagCGGCG-GCUGUUGUgCUGAC- -5'
28119 3' -57 NC_005887.1 + 11882 0.68 0.462693
Target:  5'- uUUCGUCGUucggcagCGCCGGCAACuucACGGCg- -3'
miRNA:   3'- cAGGCAGCG-------GCGGCUGUUG---UGCUGac -5'
28119 3' -57 NC_005887.1 + 12558 0.67 0.473759
Target:  5'- aUCCaG-CGCCGCUGAaucgauCAGCGCGAgCUGa -3'
miRNA:   3'- cAGG-CaGCGGCGGCU------GUUGUGCU-GAC- -5'
28119 3' -57 NC_005887.1 + 14943 0.67 0.473759
Target:  5'- -gCCGcgCGCUGCCGuACGACGCGcCg- -3'
miRNA:   3'- caGGCa-GCGGCGGC-UGUUGUGCuGac -5'
28119 3' -57 NC_005887.1 + 2945 0.67 0.473759
Target:  5'- uGUCCGUCGUCGCCuGCGcguuauccaccGCcuGCGGCa- -3'
miRNA:   3'- -CAGGCAGCGGCGGcUGU-----------UG--UGCUGac -5'
28119 3' -57 NC_005887.1 + 10159 0.67 0.473759
Target:  5'- -gCCGUCGgCGCgGGCcgcccACACGACg- -3'
miRNA:   3'- caGGCAGCgGCGgCUGu----UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 34343 0.67 0.473759
Target:  5'- -gCCGUgG-CGCCGGC--CACGGCUGg -3'
miRNA:   3'- caGGCAgCgGCGGCUGuuGUGCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.