miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 7317 1.09 0.00053
Target:  5'- cGUCCGUCGCCGCCGACAACACGACUGg -3'
miRNA:   3'- -CAGGCAGCGGCGGCUGUUGUGCUGAC- -5'
28119 3' -57 NC_005887.1 + 26861 0.77 0.113029
Target:  5'- -gCCGUUGCCGCCGG--GCAcCGACUGg -3'
miRNA:   3'- caGGCAGCGGCGGCUguUGU-GCUGAC- -5'
28119 3' -57 NC_005887.1 + 16522 0.74 0.185892
Target:  5'- aUCgCGUCGCCGCCGGC-GC-CGAgUGg -3'
miRNA:   3'- cAG-GCAGCGGCGGCUGuUGuGCUgAC- -5'
28119 3' -57 NC_005887.1 + 13605 0.74 0.196164
Target:  5'- cUUCaUCGCUGCUGGCAGCGCGGCg- -3'
miRNA:   3'- cAGGcAGCGGCGGCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 34365 0.73 0.223443
Target:  5'- -cCCGUUGCCGCCcGCAgucagccGCACGGCg- -3'
miRNA:   3'- caGGCAGCGGCGGcUGU-------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 14262 0.72 0.24232
Target:  5'- uGUCCGagGCCGCgccCGACAGCGCGuGCa- -3'
miRNA:   3'- -CAGGCagCGGCG---GCUGUUGUGC-UGac -5'
28119 3' -57 NC_005887.1 + 23565 0.72 0.248687
Target:  5'- -cCCGcaUCGCCgGCCGGCAgugcgaACGCGACUa -3'
miRNA:   3'- caGGC--AGCGG-CGGCUGU------UGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 25533 0.72 0.268618
Target:  5'- -aUCGUCGCCGCCGAgCGguGCGCGuucguaGCUGc -3'
miRNA:   3'- caGGCAGCGGCGGCU-GU--UGUGC------UGAC- -5'
28119 3' -57 NC_005887.1 + 28073 0.71 0.274843
Target:  5'- aUUCGUgaagaaaCGCCgGCCGACGACGCGAUUc -3'
miRNA:   3'- cAGGCA-------GCGG-CGGCUGUUGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 10087 0.71 0.282609
Target:  5'- uUCCGUCGUgugggcggcccgCGCCGACGGCcagcugauCGGCUGc -3'
miRNA:   3'- cAGGCAGCG------------GCGGCUGUUGu-------GCUGAC- -5'
28119 3' -57 NC_005887.1 + 14601 0.71 0.297171
Target:  5'- -gCCGaucgacgCGCCGCCGACGGcCGCGcCUGc -3'
miRNA:   3'- caGGCa------GCGGCGGCUGUU-GUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 9963 0.71 0.297171
Target:  5'- -aUCGU-GCCGCCGACcuGCAcCGGCUGg -3'
miRNA:   3'- caGGCAgCGGCGGCUGu-UGU-GCUGAC- -5'
28119 3' -57 NC_005887.1 + 2986 0.71 0.304667
Target:  5'- cGUCCGUCGUucuuCGuCCGuCAACGCGcCUGc -3'
miRNA:   3'- -CAGGCAGCG----GC-GGCuGUUGUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 9053 0.71 0.312308
Target:  5'- -cCCGuUCGCgGCCGugAACAgCGACa- -3'
miRNA:   3'- caGGC-AGCGgCGGCugUUGU-GCUGac -5'
28119 3' -57 NC_005887.1 + 21494 0.7 0.335284
Target:  5'- aUCuCGcaUCGCCGCCGGCAAUcggcgcaACGACg- -3'
miRNA:   3'- cAG-GC--AGCGGCGGCUGUUG-------UGCUGac -5'
28119 3' -57 NC_005887.1 + 29560 0.7 0.361184
Target:  5'- -gCCGUCgagGCCGCCGGC--UACGACa- -3'
miRNA:   3'- caGGCAG---CGGCGGCUGuuGUGCUGac -5'
28119 3' -57 NC_005887.1 + 33999 0.7 0.361184
Target:  5'- -gCCGagCGCCGUCGGCAGguCGACg- -3'
miRNA:   3'- caGGCa-GCGGCGGCUGUUguGCUGac -5'
28119 3' -57 NC_005887.1 + 11852 0.69 0.36983
Target:  5'- -aCCGaCGCCGCCGAgCAGCGagGACg- -3'
miRNA:   3'- caGGCaGCGGCGGCU-GUUGUg-CUGac -5'
28119 3' -57 NC_005887.1 + 10206 0.69 0.36983
Target:  5'- aGUgCGUCGCgucgaugcccgCGCCgGACGGCGCGuCUGa -3'
miRNA:   3'- -CAgGCAGCG-----------GCGG-CUGUUGUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 9828 0.69 0.378618
Target:  5'- --gCGUCGCaGCCGGuCAGCGCGGCc- -3'
miRNA:   3'- cagGCAGCGgCGGCU-GUUGUGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.