miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 2460 0.68 0.424601
Target:  5'- --aCGgCGCCGUCGACGAgGCG-CUGa -3'
miRNA:   3'- cagGCaGCGGCGGCUGUUgUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 2716 0.68 0.453741
Target:  5'- -gCCGa-GCCGCgCGACGACG-GACUGa -3'
miRNA:   3'- caGGCagCGGCG-GCUGUUGUgCUGAC- -5'
28119 3' -57 NC_005887.1 + 2779 0.68 0.415138
Target:  5'- aGUCCGUCGUCGCgCGGCu---CGGCc- -3'
miRNA:   3'- -CAGGCAGCGGCG-GCUGuuguGCUGac -5'
28119 3' -57 NC_005887.1 + 2945 0.67 0.473759
Target:  5'- uGUCCGUCGUCGCCuGCGcguuauccaccGCcuGCGGCa- -3'
miRNA:   3'- -CAGGCAGCGGCGGcUGU-----------UG--UGCUGac -5'
28119 3' -57 NC_005887.1 + 2986 0.71 0.304667
Target:  5'- cGUCCGUCGUucuuCGuCCGuCAACGCGcCUGc -3'
miRNA:   3'- -CAGGCAGCG----GC-GGCuGUUGUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 4238 0.67 0.483933
Target:  5'- gGUCaUGUCGCCGCUGuCGACGagGAuCUGg -3'
miRNA:   3'- -CAG-GCAGCGGCGGCuGUUGUg-CU-GAC- -5'
28119 3' -57 NC_005887.1 + 5142 0.66 0.536249
Target:  5'- -aCCG-CGCUGcCCGACGucgGCGCGccGCUGa -3'
miRNA:   3'- caGGCaGCGGC-GGCUGU---UGUGC--UGAC- -5'
28119 3' -57 NC_005887.1 + 7317 1.09 0.00053
Target:  5'- cGUCCGUCGCCGCCGACAACACGACUGg -3'
miRNA:   3'- -CAGGCAGCGGCGGCUGUUGUGCUGAC- -5'
28119 3' -57 NC_005887.1 + 7835 0.67 0.504587
Target:  5'- -cCCGUgGUCGCagCGACAGCACGuCg- -3'
miRNA:   3'- caGGCAgCGGCG--GCUGUUGUGCuGac -5'
28119 3' -57 NC_005887.1 + 9053 0.71 0.312308
Target:  5'- -cCCGuUCGCgGCCGugAACAgCGACa- -3'
miRNA:   3'- caGGC-AGCGgCGGCugUUGU-GCUGac -5'
28119 3' -57 NC_005887.1 + 9769 0.67 0.515056
Target:  5'- aGUCCGacaGCCuGCUGAuCGGCAUGACg- -3'
miRNA:   3'- -CAGGCag-CGG-CGGCU-GUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 9828 0.69 0.378618
Target:  5'- --gCGUCGCaGCCGGuCAGCGCGGCc- -3'
miRNA:   3'- cagGCAGCGgCGGCU-GUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 9963 0.71 0.297171
Target:  5'- -aUCGU-GCCGCCGACcuGCAcCGGCUGg -3'
miRNA:   3'- caGGCAgCGGCGGCUGu-UGU-GCUGAC- -5'
28119 3' -57 NC_005887.1 + 10087 0.71 0.282609
Target:  5'- uUCCGUCGUgugggcggcccgCGCCGACGGCcagcugauCGGCUGc -3'
miRNA:   3'- cAGGCAGCG------------GCGGCUGUUGu-------GCUGAC- -5'
28119 3' -57 NC_005887.1 + 10159 0.67 0.473759
Target:  5'- -gCCGUCGgCGCgGGCcgcccACACGACg- -3'
miRNA:   3'- caGGCAGCgGCGgCUGu----UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 10206 0.69 0.36983
Target:  5'- aGUgCGUCGCgucgaugcccgCGCCgGACGGCGCGuCUGa -3'
miRNA:   3'- -CAgGCAGCG-----------GCGG-CUGUUGUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 10810 0.66 0.557738
Target:  5'- -aCCGUUGCCGgUGACGcuGCuCGGCUu -3'
miRNA:   3'- caGGCAGCGGCgGCUGU--UGuGCUGAc -5'
28119 3' -57 NC_005887.1 + 11852 0.69 0.36983
Target:  5'- -aCCGaCGCCGCCGAgCAGCGagGACg- -3'
miRNA:   3'- caGGCaGCGGCGGCU-GUUGUg-CUGac -5'
28119 3' -57 NC_005887.1 + 11882 0.68 0.462693
Target:  5'- uUUCGUCGUucggcagCGCCGGCAACuucACGGCg- -3'
miRNA:   3'- cAGGCAGCG-------GCGGCUGUUG---UGCUGac -5'
28119 3' -57 NC_005887.1 + 12558 0.67 0.473759
Target:  5'- aUCCaG-CGCCGCUGAaucgauCAGCGCGAgCUGa -3'
miRNA:   3'- cAGG-CaGCGGCGGCU------GUUGUGCU-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.