miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 41646 0.66 0.54696
Target:  5'- -gCCGcCGCUgGCCGACAggaacgucucgGCGCuGGCUGa -3'
miRNA:   3'- caGGCaGCGG-CGGCUGU-----------UGUG-CUGAC- -5'
28119 3' -57 NC_005887.1 + 41355 0.68 0.423649
Target:  5'- aUCCGcgCGCCGCCGggaagcuguucgaGCAgaccguGCGCGACg- -3'
miRNA:   3'- cAGGCa-GCGGCGGC-------------UGU------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 40435 0.66 0.557738
Target:  5'- uUCC-UCGCgCGCgaCGGCGGCACGGCc- -3'
miRNA:   3'- cAGGcAGCG-GCG--GCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 38330 0.67 0.473759
Target:  5'- -gUCGUCGCCaCUGACAACAgCGugUc -3'
miRNA:   3'- caGGCAGCGGcGGCUGUUGU-GCugAc -5'
28119 3' -57 NC_005887.1 + 38310 0.67 0.504587
Target:  5'- -gCCGUCGCCGuuGuCGAuCAcCGGCUc -3'
miRNA:   3'- caGGCAGCGGCggCuGUU-GU-GCUGAc -5'
28119 3' -57 NC_005887.1 + 36925 0.67 0.482911
Target:  5'- -aCCGUCGCgGUCGAuguuggucaauuuCAugGCGGCUu -3'
miRNA:   3'- caGGCAGCGgCGGCU-------------GUugUGCUGAc -5'
28119 3' -57 NC_005887.1 + 35742 0.66 0.568575
Target:  5'- -gCCG--GCCGCCGAUcGCGCGcuGCUGu -3'
miRNA:   3'- caGGCagCGGCGGCUGuUGUGC--UGAC- -5'
28119 3' -57 NC_005887.1 + 35130 0.66 0.579465
Target:  5'- -gUCG-CGcCCGCCGACGACggcaGCGACc- -3'
miRNA:   3'- caGGCaGC-GGCGGCUGUUG----UGCUGac -5'
28119 3' -57 NC_005887.1 + 35068 0.68 0.434191
Target:  5'- -gCCGUCGUCGgCGG--GCGCGACUu -3'
miRNA:   3'- caGGCAGCGGCgGCUguUGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 34365 0.73 0.223443
Target:  5'- -cCCGUUGCCGCCcGCAgucagccGCACGGCg- -3'
miRNA:   3'- caGGCAGCGGCGGcUGU-------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 34343 0.67 0.473759
Target:  5'- -gCCGUgG-CGCCGGC--CACGGCUGg -3'
miRNA:   3'- caGGCAgCgGCGGCUGuuGUGCUGAC- -5'
28119 3' -57 NC_005887.1 + 34288 0.67 0.483933
Target:  5'- -gCCGUCGCCGU--GCGGC-UGACUGc -3'
miRNA:   3'- caGGCAGCGGCGgcUGUUGuGCUGAC- -5'
28119 3' -57 NC_005887.1 + 33999 0.7 0.361184
Target:  5'- -gCCGagCGCCGUCGGCAGguCGACg- -3'
miRNA:   3'- caGGCa-GCGGCGGCUGUUguGCUGac -5'
28119 3' -57 NC_005887.1 + 33929 0.67 0.483933
Target:  5'- uUCgCGUCGaCCuGCCGACGGCGCucGGCg- -3'
miRNA:   3'- cAG-GCAGC-GG-CGGCUGUUGUG--CUGac -5'
28119 3' -57 NC_005887.1 + 32485 0.69 0.378618
Target:  5'- -gCCGgccacaUCGCCGCCGGCcACGuCGACg- -3'
miRNA:   3'- caGGC------AGCGGCGGCUGuUGU-GCUGac -5'
28119 3' -57 NC_005887.1 + 29560 0.7 0.361184
Target:  5'- -gCCGUCgagGCCGCCGGC--UACGACa- -3'
miRNA:   3'- caGGCAG---CGGCGGCUGuuGUGCUGac -5'
28119 3' -57 NC_005887.1 + 29470 0.68 0.434191
Target:  5'- aGUUCGUCGUgGaUgGACAGCACGAUg- -3'
miRNA:   3'- -CAGGCAGCGgC-GgCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 28570 0.67 0.494211
Target:  5'- --gCGUCGCCGCCcGCuGCGCgGACg- -3'
miRNA:   3'- cagGCAGCGGCGGcUGuUGUG-CUGac -5'
28119 3' -57 NC_005887.1 + 28073 0.71 0.274843
Target:  5'- aUUCGUgaagaaaCGCCgGCCGACGACGCGAUUc -3'
miRNA:   3'- cAGGCA-------GCGG-CGGCUGUUGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 27266 0.66 0.54696
Target:  5'- -cCCG-CGUCGCCaauGAuCGGCACGACUu -3'
miRNA:   3'- caGGCaGCGGCGG---CU-GUUGUGCUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.