miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 14943 0.67 0.473759
Target:  5'- -gCCGcgCGCUGCCGuACGACGCGcCg- -3'
miRNA:   3'- caGGCa-GCGGCGGC-UGUUGUGCuGac -5'
28119 3' -57 NC_005887.1 + 26707 0.69 0.396608
Target:  5'- -gCCGUCgcgcgGCCGCgGGCAGCuCGACa- -3'
miRNA:   3'- caGGCAG-----CGGCGgCUGUUGuGCUGac -5'
28119 3' -57 NC_005887.1 + 41355 0.68 0.423649
Target:  5'- aUCCGcgCGCCGCCGggaagcuguucgaGCAgaccguGCGCGACg- -3'
miRNA:   3'- cAGGCa-GCGGCGGC-------------UGU------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 2460 0.68 0.424601
Target:  5'- --aCGgCGCCGUCGACGAgGCG-CUGa -3'
miRNA:   3'- cagGCaGCGGCGGCUGUUgUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 14663 0.68 0.433226
Target:  5'- -cCCGUCGCCGguUCGACGcugccccGCACGAUc- -3'
miRNA:   3'- caGGCAGCGGC--GGCUGU-------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 29470 0.68 0.434191
Target:  5'- aGUUCGUCGUgGaUgGACAGCACGAUg- -3'
miRNA:   3'- -CAGGCAGCGgC-GgCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 35068 0.68 0.434191
Target:  5'- -gCCGUCGUCGgCGG--GCGCGACUu -3'
miRNA:   3'- caGGCAGCGGCgGCUguUGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 2716 0.68 0.453741
Target:  5'- -gCCGa-GCCGCgCGACGACG-GACUGa -3'
miRNA:   3'- caGGCagCGGCG-GCUGUUGUgCUGAC- -5'
28119 3' -57 NC_005887.1 + 11882 0.68 0.462693
Target:  5'- uUUCGUCGUucggcagCGCCGGCAACuucACGGCg- -3'
miRNA:   3'- cAGGCAGCG-------GCGGCUGUUG---UGCUGac -5'
28119 3' -57 NC_005887.1 + 9828 0.69 0.378618
Target:  5'- --gCGUCGCaGCCGGuCAGCGCGGCc- -3'
miRNA:   3'- cagGCAGCGgCGGCU-GUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 10206 0.69 0.36983
Target:  5'- aGUgCGUCGCgucgaugcccgCGCCgGACGGCGCGuCUGa -3'
miRNA:   3'- -CAgGCAGCG-----------GCGG-CUGUUGUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 21494 0.7 0.335284
Target:  5'- aUCuCGcaUCGCCGCCGGCAAUcggcgcaACGACg- -3'
miRNA:   3'- cAG-GC--AGCGGCGGCUGUUG-------UGCUGac -5'
28119 3' -57 NC_005887.1 + 26861 0.77 0.113029
Target:  5'- -gCCGUUGCCGCCGG--GCAcCGACUGg -3'
miRNA:   3'- caGGCAGCGGCGGCUguUGU-GCUGAC- -5'
28119 3' -57 NC_005887.1 + 16522 0.74 0.185892
Target:  5'- aUCgCGUCGCCGCCGGC-GC-CGAgUGg -3'
miRNA:   3'- cAG-GCAGCGGCGGCUGuUGuGCUgAC- -5'
28119 3' -57 NC_005887.1 + 13605 0.74 0.196164
Target:  5'- cUUCaUCGCUGCUGGCAGCGCGGCg- -3'
miRNA:   3'- cAGGcAGCGGCGGCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 23565 0.72 0.248687
Target:  5'- -cCCGcaUCGCCgGCCGGCAgugcgaACGCGACUa -3'
miRNA:   3'- caGGC--AGCGG-CGGCUGU------UGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 25533 0.72 0.268618
Target:  5'- -aUCGUCGCCGCCGAgCGguGCGCGuucguaGCUGc -3'
miRNA:   3'- caGGCAGCGGCGGCU-GU--UGUGC------UGAC- -5'
28119 3' -57 NC_005887.1 + 10087 0.71 0.282609
Target:  5'- uUCCGUCGUgugggcggcccgCGCCGACGGCcagcugauCGGCUGc -3'
miRNA:   3'- cAGGCAGCG------------GCGGCUGUUGu-------GCUGAC- -5'
28119 3' -57 NC_005887.1 + 2986 0.71 0.304667
Target:  5'- cGUCCGUCGUucuuCGuCCGuCAACGCGcCUGc -3'
miRNA:   3'- -CAGGCAGCG----GC-GGCuGUUGUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 9053 0.71 0.312308
Target:  5'- -cCCGuUCGCgGCCGugAACAgCGACa- -3'
miRNA:   3'- caGGC-AGCGgCGGCugUUGU-GCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.