miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 35130 0.66 0.579465
Target:  5'- -gUCG-CGcCCGCCGACGACggcaGCGACc- -3'
miRNA:   3'- caGGCaGC-GGCGGCUGUUG----UGCUGac -5'
28119 3' -57 NC_005887.1 + 2779 0.68 0.415138
Target:  5'- aGUCCGUCGUCGCgCGGCu---CGGCc- -3'
miRNA:   3'- -CAGGCAGCGGCG-GCUGuuguGCUGac -5'
28119 3' -57 NC_005887.1 + 17977 0.69 0.396608
Target:  5'- cGUCCGUccaaccugugaCGCCGCCGAacuuCAucguCGCGGCg- -3'
miRNA:   3'- -CAGGCA-----------GCGGCGGCU----GUu---GUGCUGac -5'
28119 3' -57 NC_005887.1 + 34365 0.73 0.223443
Target:  5'- -cCCGUUGCCGCCcGCAgucagccGCACGGCg- -3'
miRNA:   3'- caGGCAGCGGCGGcUGU-------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 16980 0.66 0.536249
Target:  5'- -cCCGUCGUCuuGCCGAUcuGCuCGGCUGc -3'
miRNA:   3'- caGGCAGCGG--CGGCUGu-UGuGCUGAC- -5'
28119 3' -57 NC_005887.1 + 26928 0.66 0.536249
Target:  5'- uUCCaGUCGgUGcCCGGCGGCaACGGCUa -3'
miRNA:   3'- cAGG-CAGCgGC-GGCUGUUG-UGCUGAc -5'
28119 3' -57 NC_005887.1 + 13453 0.67 0.525612
Target:  5'- cGUCCGccgCGCCgGCCuuCAGCGCGAg-- -3'
miRNA:   3'- -CAGGCa--GCGG-CGGcuGUUGUGCUgac -5'
28119 3' -57 NC_005887.1 + 25030 0.67 0.504587
Target:  5'- uGUCCcUCGCgGCCGcgcGCAAgGCGGCc- -3'
miRNA:   3'- -CAGGcAGCGgCGGC---UGUUgUGCUGac -5'
28119 3' -57 NC_005887.1 + 2945 0.67 0.473759
Target:  5'- uGUCCGUCGUCGCCuGCGcguuauccaccGCcuGCGGCa- -3'
miRNA:   3'- -CAGGCAGCGGCGGcUGU-----------UG--UGCUGac -5'
28119 3' -57 NC_005887.1 + 22308 0.68 0.434191
Target:  5'- -aCCGUCGCUGaUCGugAaccACGCGACg- -3'
miRNA:   3'- caGGCAGCGGC-GGCugU---UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 12558 0.67 0.473759
Target:  5'- aUCCaG-CGCCGCUGAaucgauCAGCGCGAgCUGa -3'
miRNA:   3'- cAGG-CaGCGGCGGCU------GUUGUGCU-GAC- -5'
28119 3' -57 NC_005887.1 + 4238 0.67 0.483933
Target:  5'- gGUCaUGUCGCCGCUGuCGACGagGAuCUGg -3'
miRNA:   3'- -CAG-GCAGCGGCGGCuGUUGUg-CU-GAC- -5'
28119 3' -57 NC_005887.1 + 35742 0.66 0.568575
Target:  5'- -gCCG--GCCGCCGAUcGCGCGcuGCUGu -3'
miRNA:   3'- caGGCagCGGCGGCUGuUGUGC--UGAC- -5'
28119 3' -57 NC_005887.1 + 38330 0.67 0.473759
Target:  5'- -gUCGUCGCCaCUGACAACAgCGugUc -3'
miRNA:   3'- caGGCAGCGGcGGCUGUUGU-GCugAc -5'
28119 3' -57 NC_005887.1 + 40435 0.66 0.557738
Target:  5'- uUCC-UCGCgCGCgaCGGCGGCACGGCc- -3'
miRNA:   3'- cAGGcAGCG-GCG--GCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 18680 0.67 0.493178
Target:  5'- -gCCGaucgCGCUGCCGAgCAACGaaccguaaucggcCGACUGg -3'
miRNA:   3'- caGGCa---GCGGCGGCU-GUUGU-------------GCUGAC- -5'
28119 3' -57 NC_005887.1 + 19010 0.68 0.434191
Target:  5'- cGUgCGUUauugGCCGCCGACGGC-CG-CUGc -3'
miRNA:   3'- -CAgGCAG----CGGCGGCUGUUGuGCuGAC- -5'
28119 3' -57 NC_005887.1 + 16585 0.69 0.405806
Target:  5'- -cUCGgCGCCGgCGGCGACGCGAUc- -3'
miRNA:   3'- caGGCaGCGGCgGCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 41646 0.66 0.54696
Target:  5'- -gCCGcCGCUgGCCGACAggaacgucucgGCGCuGGCUGa -3'
miRNA:   3'- caGGCaGCGG-CGGCUGU-----------UGUG-CUGAC- -5'
28119 3' -57 NC_005887.1 + 24261 0.66 0.536249
Target:  5'- -----aCGCaCGUCGGCAACACGACg- -3'
miRNA:   3'- caggcaGCG-GCGGCUGUUGUGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.