miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 13453 0.67 0.525612
Target:  5'- cGUCCGccgCGCCgGCCuuCAGCGCGAg-- -3'
miRNA:   3'- -CAGGCa--GCGG-CGGcuGUUGUGCUgac -5'
28119 3' -57 NC_005887.1 + 13563 0.66 0.545886
Target:  5'- -gCUGcCGCCcgagcagGCCGACGACGCGAa-- -3'
miRNA:   3'- caGGCaGCGG-------CGGCUGUUGUGCUgac -5'
28119 3' -57 NC_005887.1 + 13605 0.74 0.196164
Target:  5'- cUUCaUCGCUGCUGGCAGCGCGGCg- -3'
miRNA:   3'- cAGGcAGCGGCGGCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 14028 0.66 0.535182
Target:  5'- -gCCGgcgCGCCGCCGGCGcagccugAgACGAUg- -3'
miRNA:   3'- caGGCa--GCGGCGGCUGU-------UgUGCUGac -5'
28119 3' -57 NC_005887.1 + 14166 0.66 0.557738
Target:  5'- aUCCGUCGacaucgguuaCGUCGAUuGCACGcGCUGu -3'
miRNA:   3'- cAGGCAGCg---------GCGGCUGuUGUGC-UGAC- -5'
28119 3' -57 NC_005887.1 + 14262 0.72 0.24232
Target:  5'- uGUCCGagGCCGCgccCGACAGCGCGuGCa- -3'
miRNA:   3'- -CAGGCagCGGCG---GCUGUUGUGC-UGac -5'
28119 3' -57 NC_005887.1 + 14601 0.71 0.297171
Target:  5'- -gCCGaucgacgCGCCGCCGACGGcCGCGcCUGc -3'
miRNA:   3'- caGGCa------GCGGCGGCUGUU-GUGCuGAC- -5'
28119 3' -57 NC_005887.1 + 14617 0.67 0.515056
Target:  5'- cGUCgG-CGCCGUCGAgGGCGCG-CUc -3'
miRNA:   3'- -CAGgCaGCGGCGGCUgUUGUGCuGAc -5'
28119 3' -57 NC_005887.1 + 14663 0.68 0.433226
Target:  5'- -cCCGUCGCCGguUCGACGcugccccGCACGAUc- -3'
miRNA:   3'- caGGCAGCGGC--GGCUGU-------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 14699 0.66 0.579465
Target:  5'- -cUCGUCGCgGCgGGCGggccggGCGCGGCg- -3'
miRNA:   3'- caGGCAGCGgCGgCUGU------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 14943 0.67 0.473759
Target:  5'- -gCCGcgCGCUGCCGuACGACGCGcCg- -3'
miRNA:   3'- caGGCa-GCGGCGGC-UGUUGUGCuGac -5'
28119 3' -57 NC_005887.1 + 16263 0.66 0.568575
Target:  5'- -aCCGUCGCCgaGCUGauGCAGCAgauCGACg- -3'
miRNA:   3'- caGGCAGCGG--CGGC--UGUUGU---GCUGac -5'
28119 3' -57 NC_005887.1 + 16522 0.74 0.185892
Target:  5'- aUCgCGUCGCCGCCGGC-GC-CGAgUGg -3'
miRNA:   3'- cAG-GCAGCGGCGGCUGuUGuGCUgAC- -5'
28119 3' -57 NC_005887.1 + 16585 0.69 0.405806
Target:  5'- -cUCGgCGCCGgCGGCGACGCGAUc- -3'
miRNA:   3'- caGGCaGCGGCgGCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 16980 0.66 0.536249
Target:  5'- -cCCGUCGUCuuGCCGAUcuGCuCGGCUGc -3'
miRNA:   3'- caGGCAGCGG--CGGCUGu-UGuGCUGAC- -5'
28119 3' -57 NC_005887.1 + 17977 0.69 0.396608
Target:  5'- cGUCCGUccaaccugugaCGCCGCCGAacuuCAucguCGCGGCg- -3'
miRNA:   3'- -CAGGCA-----------GCGGCGGCU----GUu---GUGCUGac -5'
28119 3' -57 NC_005887.1 + 18412 0.67 0.483933
Target:  5'- -gCCGcggCGCuCGUCGuCAGCACGACg- -3'
miRNA:   3'- caGGCa--GCG-GCGGCuGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 18680 0.67 0.493178
Target:  5'- -gCCGaucgCGCUGCCGAgCAACGaaccguaaucggcCGACUGg -3'
miRNA:   3'- caGGCa---GCGGCGGCU-GUUGU-------------GCUGAC- -5'
28119 3' -57 NC_005887.1 + 19010 0.68 0.434191
Target:  5'- cGUgCGUUauugGCCGCCGACGGC-CG-CUGc -3'
miRNA:   3'- -CAgGCAG----CGGCGGCUGUUGuGCuGAC- -5'
28119 3' -57 NC_005887.1 + 21492 0.69 0.378618
Target:  5'- --gCGUCGUCGCCGaaacaGCGGCAgGugUGg -3'
miRNA:   3'- cagGCAGCGGCGGC-----UGUUGUgCugAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.