miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 5' -56.2 NC_005887.1 + 6941 0.67 0.518587
Target:  5'- cUUGAUCaGCGcCUGCGcguuGGCCGACGuCGc -3'
miRNA:   3'- aAGCUAG-CGC-GACGU----CUGGCUGCuGU- -5'
28119 5' -56.2 NC_005887.1 + 11994 0.67 0.486798
Target:  5'- --aGGUCGCGCccacguUGCAGAcauCCGGCGcACGc -3'
miRNA:   3'- aagCUAGCGCG------ACGUCU---GGCUGC-UGU- -5'
28119 5' -56.2 NC_005887.1 + 7883 0.67 0.486798
Target:  5'- -cCGAcUCGUcCgacgaGCAGGCCGGCGACGa -3'
miRNA:   3'- aaGCU-AGCGcGa----CGUCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 3773 0.67 0.486798
Target:  5'- -gCGGUCgGCGC-GCGGcUCGACGGCGu -3'
miRNA:   3'- aaGCUAG-CGCGaCGUCuGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 2262 0.67 0.486798
Target:  5'- aUCGGUUuGCGCUGCccgaucaccgcGGCCGGCGuCAg -3'
miRNA:   3'- aAGCUAG-CGCGACGu----------CUGGCUGCuGU- -5'
28119 5' -56.2 NC_005887.1 + 26431 0.67 0.476407
Target:  5'- -gCGGgaacgCGCGCUGCAG-CCGcGCGAg- -3'
miRNA:   3'- aaGCUa----GCGCGACGUCuGGC-UGCUgu -5'
28119 5' -56.2 NC_005887.1 + 30725 0.68 0.466126
Target:  5'- cUUG-UCGCGCUGCGuGGCCuucGCGACu -3'
miRNA:   3'- aAGCuAGCGCGACGU-CUGGc--UGCUGu -5'
28119 5' -56.2 NC_005887.1 + 14185 0.68 0.455962
Target:  5'- gUCGAUugcaCGCGCUGuCGGGCgCGGCcucgGACAg -3'
miRNA:   3'- aAGCUA----GCGCGAC-GUCUG-GCUG----CUGU- -5'
28119 5' -56.2 NC_005887.1 + 35864 0.68 0.455962
Target:  5'- --gGAUUGCGCUcgGCAGACaCcGCGACGc -3'
miRNA:   3'- aagCUAGCGCGA--CGUCUG-GcUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 16334 0.68 0.455962
Target:  5'- gUCGAUC-UGCUGCAucaGCuCGGCGACGg -3'
miRNA:   3'- aAGCUAGcGCGACGUc--UG-GCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 14627 0.68 0.436
Target:  5'- gUCGAgggCGCGCUcacgGCAG-CCGGCG-CGg -3'
miRNA:   3'- aAGCUa--GCGCGA----CGUCuGGCUGCuGU- -5'
28119 5' -56.2 NC_005887.1 + 18679 0.68 0.426209
Target:  5'- -cCGAUCGCGCUGCcGAgCaACGAa- -3'
miRNA:   3'- aaGCUAGCGCGACGuCUgGcUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 29452 0.69 0.416551
Target:  5'- -gCGAcCGCGCcGCauGGGCCGAgGGCAu -3'
miRNA:   3'- aaGCUaGCGCGaCG--UCUGGCUgCUGU- -5'
28119 5' -56.2 NC_005887.1 + 30828 0.69 0.397641
Target:  5'- cUCGccgCGCGCacggucgaGCuGACCGACGGCGa -3'
miRNA:   3'- aAGCua-GCGCGa-------CGuCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 25722 0.69 0.397641
Target:  5'- -gCGA-CGCGCUGCGG-CUGGCGGu- -3'
miRNA:   3'- aaGCUaGCGCGACGUCuGGCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 23637 0.69 0.379292
Target:  5'- gUCGcguUCGCaCUGCcGGCCGGCGAUg -3'
miRNA:   3'- aAGCu--AGCGcGACGuCUGGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 8932 0.69 0.379292
Target:  5'- -gCGAUcCGCGCgacGCAGAgCGcCGACAc -3'
miRNA:   3'- aaGCUA-GCGCGa--CGUCUgGCuGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 10990 0.69 0.370333
Target:  5'- aUCGggCGUGa-GCAGGCCGGcCGACGu -3'
miRNA:   3'- aAGCuaGCGCgaCGUCUGGCU-GCUGU- -5'
28119 5' -56.2 NC_005887.1 + 14690 0.7 0.361519
Target:  5'- -aCGAUCGgGCUcgucgcggcggGCGGGCCGggcGCGGCGa -3'
miRNA:   3'- aaGCUAGCgCGA-----------CGUCUGGC---UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 16472 0.7 0.344334
Target:  5'- cUCGAcCGCGCgGCAGGauCCGGCGGg- -3'
miRNA:   3'- aAGCUaGCGCGaCGUCU--GGCUGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.