miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 5' -56.2 NC_005887.1 + 11994 0.67 0.486798
Target:  5'- --aGGUCGCGCccacguUGCAGAcauCCGGCGcACGc -3'
miRNA:   3'- aagCUAGCGCG------ACGUCU---GGCUGC-UGU- -5'
28119 5' -56.2 NC_005887.1 + 13093 0.73 0.228225
Target:  5'- cUCGAUCGCggaguGCUGCAGggcguGCCGAagguCGACAc -3'
miRNA:   3'- aAGCUAGCG-----CGACGUC-----UGGCU----GCUGU- -5'
28119 5' -56.2 NC_005887.1 + 13381 0.7 0.327744
Target:  5'- -gCGcUCGCGCUGaAGGCCGgcGCGGCGg -3'
miRNA:   3'- aaGCuAGCGCGACgUCUGGC--UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 13556 0.76 0.147001
Target:  5'- -gCGAU-GCGCUgccgcccgaGCAGGCCGACGACGc -3'
miRNA:   3'- aaGCUAgCGCGA---------CGUCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 13582 0.67 0.529367
Target:  5'- aUCGuggCGCGCaUGCccguGCCGGCGACc -3'
miRNA:   3'- aAGCua-GCGCG-ACGuc--UGGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 14185 0.68 0.455962
Target:  5'- gUCGAUugcaCGCGCUGuCGGGCgCGGCcucgGACAg -3'
miRNA:   3'- aAGCUA----GCGCGAC-GUCUG-GCUG----CUGU- -5'
28119 5' -56.2 NC_005887.1 + 14627 0.68 0.436
Target:  5'- gUCGAgggCGCGCUcacgGCAG-CCGGCG-CGg -3'
miRNA:   3'- aAGCUa--GCGCGA----CGUCuGGCUGCuGU- -5'
28119 5' -56.2 NC_005887.1 + 14690 0.7 0.361519
Target:  5'- -aCGAUCGgGCUcgucgcggcggGCGGGCCGggcGCGGCGa -3'
miRNA:   3'- aaGCUAGCgCGA-----------CGUCUGGC---UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 14738 0.77 0.117116
Target:  5'- -cCGAUCGUGCgggGCAGcgucgaACCGGCGACGg -3'
miRNA:   3'- aaGCUAGCGCGa--CGUC------UGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 15397 0.72 0.247154
Target:  5'- -cUGAUCGCGCgcgggcaGCGGAUCGuCGACGa -3'
miRNA:   3'- aaGCUAGCGCGa------CGUCUGGCuGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 15781 0.66 0.562168
Target:  5'- -gCGAagGCGCagaaGCAGAUCGauGCGGCAg -3'
miRNA:   3'- aaGCUagCGCGa---CGUCUGGC--UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 15901 0.66 0.551165
Target:  5'- cUCGA-CGCGCaGCuGGCCGACcuGCGu -3'
miRNA:   3'- aAGCUaGCGCGaCGuCUGGCUGc-UGU- -5'
28119 5' -56.2 NC_005887.1 + 16334 0.68 0.455962
Target:  5'- gUCGAUC-UGCUGCAucaGCuCGGCGACGg -3'
miRNA:   3'- aAGCUAGcGCGACGUc--UG-GCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 16472 0.7 0.344334
Target:  5'- cUCGAcCGCGCgGCAGGauCCGGCGGg- -3'
miRNA:   3'- aAGCUaGCGCGaCGUCU--GGCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 18118 0.66 0.595494
Target:  5'- -cCGGaCGCGCUGUAcgcaACCGGCGAa- -3'
miRNA:   3'- aaGCUaGCGCGACGUc---UGGCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 18679 0.68 0.426209
Target:  5'- -cCGAUCGCGCUGCcGAgCaACGAa- -3'
miRNA:   3'- aaGCUAGCGCGACGuCUgGcUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 18977 0.72 0.267365
Target:  5'- aUUCGGUgaGCGCUGCGGGCUgccggugccgGGCGACc -3'
miRNA:   3'- -AAGCUAg-CGCGACGUCUGG----------CUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 19339 0.71 0.294104
Target:  5'- cUCGAuaagcugaccaugcUCGCGCaGCAGACgcgugCGGCGACGa -3'
miRNA:   3'- aAGCU--------------AGCGCGaCGUCUG-----GCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 22138 0.66 0.595494
Target:  5'- -cUGAUCGCGCUcgGCuucaucggcgaaGGGCUGACGcGCAa -3'
miRNA:   3'- aaGCUAGCGCGA--CG------------UCUGGCUGC-UGU- -5'
28119 5' -56.2 NC_005887.1 + 23183 0.67 0.529367
Target:  5'- cUCG-UCGCGCUcGCGaucacGGCCGGgGGCGg -3'
miRNA:   3'- aAGCuAGCGCGA-CGU-----CUGGCUgCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.