Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28119 | 5' | -56.2 | NC_005887.1 | + | 695 | 0.66 | 0.595494 |
Target: 5'- -cCGAgUCGaUGCUGCucGCCGACGugAa -3' miRNA: 3'- aaGCU-AGC-GCGACGucUGGCUGCugU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 2262 | 0.67 | 0.486798 |
Target: 5'- aUCGGUUuGCGCUGCccgaucaccgcGGCCGGCGuCAg -3' miRNA: 3'- aAGCUAG-CGCGACGu----------CUGGCUGCuGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 2343 | 0.8 | 0.075569 |
Target: 5'- -gCGAUCcggcgggcgaccaGCGCUcGCAGGCCGACGACGa -3' miRNA: 3'- aaGCUAG-------------CGCGA-CGUCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 3773 | 0.67 | 0.486798 |
Target: 5'- -gCGGUCgGCGC-GCGGcUCGACGGCGu -3' miRNA: 3'- aaGCUAG-CGCGaCGUCuGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 4696 | 0.72 | 0.253747 |
Target: 5'- cUUGAUCGCGCcgGCGGccACCGGCGccGCGg -3' miRNA: 3'- aAGCUAGCGCGa-CGUC--UGGCUGC--UGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 4923 | 0.67 | 0.529367 |
Target: 5'- aUCGAUCguGCGCUGCAcGGggGACGugAu -3' miRNA: 3'- aAGCUAG--CGCGACGU-CUggCUGCugU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 6086 | 0.66 | 0.540229 |
Target: 5'- -aUGcgCGCGCUGCGaaGCUGuACGACAa -3' miRNA: 3'- aaGCuaGCGCGACGUc-UGGC-UGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 6941 | 0.67 | 0.518587 |
Target: 5'- cUUGAUCaGCGcCUGCGcguuGGCCGACGuCGc -3' miRNA: 3'- aAGCUAG-CGC-GACGU----CUGGCUGCuGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 7356 | 1.06 | 0.000811 |
Target: 5'- aUUCGAUCGCGCUGCAGACCGACGACAa -3' miRNA: 3'- -AAGCUAGCGCGACGUCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 7883 | 0.67 | 0.486798 |
Target: 5'- -cCGAcUCGUcCgacgaGCAGGCCGGCGACGa -3' miRNA: 3'- aaGCU-AGCGcGa----CGUCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 8443 | 0.66 | 0.566586 |
Target: 5'- cUUCG-UCGCGCUcugcgucaggcuuucGCAGGCUucggccgccaGACGGCAc -3' miRNA: 3'- -AAGCuAGCGCGA---------------CGUCUGG----------CUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 8508 | 0.73 | 0.222194 |
Target: 5'- cUCGAUCGCGUUgacGCGGAucgcUCGGCGAUAg -3' miRNA: 3'- aAGCUAGCGCGA---CGUCU----GGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 8875 | 0.71 | 0.282293 |
Target: 5'- gUCGAgaucgcgacgccguaCGCGCUcGCGGACCuGACGACc -3' miRNA: 3'- aAGCUa--------------GCGCGA-CGUCUGG-CUGCUGu -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 8932 | 0.69 | 0.379292 |
Target: 5'- -gCGAUcCGCGCgacGCAGAgCGcCGACAc -3' miRNA: 3'- aaGCUA-GCGCGa--CGUCUgGCuGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 9256 | 0.66 | 0.561065 |
Target: 5'- -gCGAUCGCGUcuaucugUGCAcggcggucGGCaCGGCGACGc -3' miRNA: 3'- aaGCUAGCGCG-------ACGU--------CUG-GCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 9681 | 0.66 | 0.551165 |
Target: 5'- -aCGAagGaCGCcgaccaGCAGACCGAUGACu -3' miRNA: 3'- aaGCUagC-GCGa-----CGUCUGGCUGCUGu -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 10298 | 0.66 | 0.59326 |
Target: 5'- gUCGAauaccugaacccCGCGCUGCAGGauGACGAg- -3' miRNA: 3'- aAGCUa-----------GCGCGACGUCUggCUGCUgu -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 10427 | 0.84 | 0.037187 |
Target: 5'- -aCGGUCGCGgUGCuGACCGACGGCGc -3' miRNA: 3'- aaGCUAGCGCgACGuCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 10507 | 0.74 | 0.204909 |
Target: 5'- aUCGAUCGUGCauauCGGAgucCCGACGACAu -3' miRNA: 3'- aAGCUAGCGCGac--GUCU---GGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 10990 | 0.69 | 0.370333 |
Target: 5'- aUCGggCGUGa-GCAGGCCGGcCGACGu -3' miRNA: 3'- aAGCuaGCGCgaCGUCUGGCU-GCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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