Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28119 | 5' | -56.2 | NC_005887.1 | + | 7356 | 1.06 | 0.000811 |
Target: 5'- aUUCGAUCGCGCUGCAGACCGACGACAa -3' miRNA: 3'- -AAGCUAGCGCGACGUCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 10427 | 0.84 | 0.037187 |
Target: 5'- -aCGGUCGCGgUGCuGACCGACGGCGc -3' miRNA: 3'- aaGCUAGCGCgACGuCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 2343 | 0.8 | 0.075569 |
Target: 5'- -gCGAUCcggcgggcgaccaGCGCUcGCAGGCCGACGACGa -3' miRNA: 3'- aaGCUAG-------------CGCGA-CGUCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 14738 | 0.77 | 0.117116 |
Target: 5'- -cCGAUCGUGCgggGCAGcgucgaACCGGCGACGg -3' miRNA: 3'- aaGCUAGCGCGa--CGUC------UGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 13556 | 0.76 | 0.147001 |
Target: 5'- -gCGAU-GCGCUgccgcccgaGCAGGCCGACGACGc -3' miRNA: 3'- aaGCUAgCGCGA---------CGUCUGGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 10507 | 0.74 | 0.204909 |
Target: 5'- aUCGAUCGUGCauauCGGAgucCCGACGACAu -3' miRNA: 3'- aAGCUAGCGCGac--GUCU---GGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 8508 | 0.73 | 0.222194 |
Target: 5'- cUCGAUCGCGUUgacGCGGAucgcUCGGCGAUAg -3' miRNA: 3'- aAGCUAGCGCGA---CGUCU----GGCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 13093 | 0.73 | 0.228225 |
Target: 5'- cUCGAUCGCggaguGCUGCAGggcguGCCGAagguCGACAc -3' miRNA: 3'- aAGCUAGCG-----CGACGUC-----UGGCU----GCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 15397 | 0.72 | 0.247154 |
Target: 5'- -cUGAUCGCGCgcgggcaGCGGAUCGuCGACGa -3' miRNA: 3'- aaGCUAGCGCGa------CGUCUGGCuGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 4696 | 0.72 | 0.253747 |
Target: 5'- cUUGAUCGCGCcgGCGGccACCGGCGccGCGg -3' miRNA: 3'- aAGCUAGCGCGa-CGUC--UGGCUGC--UGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 18977 | 0.72 | 0.267365 |
Target: 5'- aUUCGGUgaGCGCUGCGGGCUgccggugccgGGCGACc -3' miRNA: 3'- -AAGCUAg-CGCGACGUCUGG----------CUGCUGu -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 34710 | 0.72 | 0.274392 |
Target: 5'- gUCG-UCGCGCuUGCGGugCG-CGGCGa -3' miRNA: 3'- aAGCuAGCGCG-ACGUCugGCuGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 23469 | 0.71 | 0.281567 |
Target: 5'- aUCGA-CGCGCUGCugcGGCUGccaGCGGCAg -3' miRNA: 3'- aAGCUaGCGCGACGu--CUGGC---UGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 8875 | 0.71 | 0.282293 |
Target: 5'- gUCGAgaucgcgacgccguaCGCGCUcGCGGACCuGACGACc -3' miRNA: 3'- aAGCUa--------------GCGCGA-CGUCUGG-CUGCUGu -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 19339 | 0.71 | 0.294104 |
Target: 5'- cUCGAuaagcugaccaugcUCGCGCaGCAGACgcgugCGGCGACGa -3' miRNA: 3'- aAGCU--------------AGCGCGaCGUCUG-----GCUGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 13381 | 0.7 | 0.327744 |
Target: 5'- -gCGcUCGCGCUGaAGGCCGgcGCGGCGg -3' miRNA: 3'- aaGCuAGCGCGACgUCUGGC--UGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 37317 | 0.7 | 0.335964 |
Target: 5'- aUUCGGUCGuCGCaGCAGcGCCGGCacuGGCAu -3' miRNA: 3'- -AAGCUAGC-GCGaCGUC-UGGCUG---CUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 16472 | 0.7 | 0.344334 |
Target: 5'- cUCGAcCGCGCgGCAGGauCCGGCGGg- -3' miRNA: 3'- aAGCUaGCGCGaCGUCU--GGCUGCUgu -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 14690 | 0.7 | 0.361519 |
Target: 5'- -aCGAUCGgGCUcgucgcggcggGCGGGCCGggcGCGGCGa -3' miRNA: 3'- aaGCUAGCgCGA-----------CGUCUGGC---UGCUGU- -5' |
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28119 | 5' | -56.2 | NC_005887.1 | + | 10990 | 0.69 | 0.370333 |
Target: 5'- aUCGggCGUGa-GCAGGCCGGcCGACGu -3' miRNA: 3'- aAGCuaGCGCgaCGUCUGGCU-GCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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