miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 5' -56.2 NC_005887.1 + 7883 0.67 0.486798
Target:  5'- -cCGAcUCGUcCgacgaGCAGGCCGGCGACGa -3'
miRNA:   3'- aaGCU-AGCGcGa----CGUCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 16472 0.7 0.344334
Target:  5'- cUCGAcCGCGCgGCAGGauCCGGCGGg- -3'
miRNA:   3'- aAGCUaGCGCGaCGUCU--GGCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 14690 0.7 0.361519
Target:  5'- -aCGAUCGgGCUcgucgcggcggGCGGGCCGggcGCGGCGa -3'
miRNA:   3'- aaGCUAGCgCGA-----------CGUCUGGC---UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 8932 0.69 0.379292
Target:  5'- -gCGAUcCGCGCgacGCAGAgCGcCGACAc -3'
miRNA:   3'- aaGCUA-GCGCGa--CGUCUgGCuGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 14627 0.68 0.436
Target:  5'- gUCGAgggCGCGCUcacgGCAG-CCGGCG-CGg -3'
miRNA:   3'- aAGCUa--GCGCGA----CGUCuGGCUGCuGU- -5'
28119 5' -56.2 NC_005887.1 + 35864 0.68 0.455962
Target:  5'- --gGAUUGCGCUcgGCAGACaCcGCGACGc -3'
miRNA:   3'- aagCUAGCGCGA--CGUCUG-GcUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 14185 0.68 0.455962
Target:  5'- gUCGAUugcaCGCGCUGuCGGGCgCGGCcucgGACAg -3'
miRNA:   3'- aAGCUA----GCGCGAC-GUCUG-GCUG----CUGU- -5'
28119 5' -56.2 NC_005887.1 + 30725 0.68 0.466126
Target:  5'- cUUG-UCGCGCUGCGuGGCCuucGCGACu -3'
miRNA:   3'- aAGCuAGCGCGACGU-CUGGc--UGCUGu -5'
28119 5' -56.2 NC_005887.1 + 26431 0.67 0.476407
Target:  5'- -gCGGgaacgCGCGCUGCAG-CCGcGCGAg- -3'
miRNA:   3'- aaGCUa----GCGCGACGUCuGGC-UGCUgu -5'
28119 5' -56.2 NC_005887.1 + 37317 0.7 0.335964
Target:  5'- aUUCGGUCGuCGCaGCAGcGCCGGCacuGGCAu -3'
miRNA:   3'- -AAGCUAGC-GCGaCGUC-UGGCUG---CUGU- -5'
28119 5' -56.2 NC_005887.1 + 13381 0.7 0.327744
Target:  5'- -gCGcUCGCGCUGaAGGCCGgcGCGGCGg -3'
miRNA:   3'- aaGCuAGCGCGACgUCUGGC--UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 19339 0.71 0.294104
Target:  5'- cUCGAuaagcugaccaugcUCGCGCaGCAGACgcgugCGGCGACGa -3'
miRNA:   3'- aAGCU--------------AGCGCGaCGUCUG-----GCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 10427 0.84 0.037187
Target:  5'- -aCGGUCGCGgUGCuGACCGACGGCGc -3'
miRNA:   3'- aaGCUAGCGCgACGuCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 2343 0.8 0.075569
Target:  5'- -gCGAUCcggcgggcgaccaGCGCUcGCAGGCCGACGACGa -3'
miRNA:   3'- aaGCUAG-------------CGCGA-CGUCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 13556 0.76 0.147001
Target:  5'- -gCGAU-GCGCUgccgcccgaGCAGGCCGACGACGc -3'
miRNA:   3'- aaGCUAgCGCGA---------CGUCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 10507 0.74 0.204909
Target:  5'- aUCGAUCGUGCauauCGGAgucCCGACGACAu -3'
miRNA:   3'- aAGCUAGCGCGac--GUCU---GGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 13093 0.73 0.228225
Target:  5'- cUCGAUCGCggaguGCUGCAGggcguGCCGAagguCGACAc -3'
miRNA:   3'- aAGCUAGCG-----CGACGUC-----UGGCU----GCUGU- -5'
28119 5' -56.2 NC_005887.1 + 15397 0.72 0.247154
Target:  5'- -cUGAUCGCGCgcgggcaGCGGAUCGuCGACGa -3'
miRNA:   3'- aaGCUAGCGCGa------CGUCUGGCuGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 34710 0.72 0.274392
Target:  5'- gUCG-UCGCGCuUGCGGugCG-CGGCGa -3'
miRNA:   3'- aAGCuAGCGCG-ACGUCugGCuGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 8875 0.71 0.282293
Target:  5'- gUCGAgaucgcgacgccguaCGCGCUcGCGGACCuGACGACc -3'
miRNA:   3'- aAGCUa--------------GCGCGA-CGUCUGG-CUGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.